BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0560000 Os06g0560000|AK063490
(484 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0560000 Ferroportin1 family protein 779 0.0
Os12g0562100 Conserved hypothetical protein 91 2e-18
Os05g0131500 80 3e-15
>Os06g0560000 Ferroportin1 family protein
Length = 484
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/460 (87%), Positives = 402/460 (87%)
Query: 25 RRLYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVDR 84
RRLYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVDR
Sbjct: 25 RRLYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVDR 84
Query: 85 XXXXXXXXXXXXXQGASFVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNVXXXXXXXX 144
QGASFVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNV
Sbjct: 85 LAYLQVLRLWLLLQGASFVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNVSGALAALS 144
Query: 145 XXXXXXXXEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISFVSMEXXX 204
EREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISFVSME
Sbjct: 145 TLAGTILIEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISFVSMEASA 204
Query: 205 XXXXXXXXXXXXXQYWLFVSVYAGFPALSETSQISXXXXXXXXXXXXXQPQKVERLWMTM 264
QYWLFVSVYAGFPALSETSQIS QPQKVERLWMTM
Sbjct: 205 AALAAWNLAAVWVQYWLFVSVYAGFPALSETSQISRRRADDDEAAAAAQPQKVERLWMTM 264
Query: 265 LPCWESWAVYARQEVVLPGVALAFLYFTVLSFGTLMTATLDWEGIPAYVISLARGVSAAV 324
LPCWESWAVYARQEVVLPGVALAFLYFTVLSFGTLMTATLDWEGIPAYVISLARGVSAAV
Sbjct: 265 LPCWESWAVYARQEVVLPGVALAFLYFTVLSFGTLMTATLDWEGIPAYVISLARGVSAAV 324
Query: 325 GIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPLASAWMLMGGVAAS 384
GIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPLASAWMLMGGVAAS
Sbjct: 325 GIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPLASAWMLMGGVAAS 384
Query: 385 RLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFGELIV 444
RLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFGELIV
Sbjct: 385 RLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFGELIV 444
Query: 445 LSFFLVTCAAAMYTMHVYRVRKHLFHLDRILPKMNWIKAS 484
LSFFLVTCAAAMYTMHVYRVRKHLFHLDRILPKMNWIKAS
Sbjct: 445 LSFFLVTCAAAMYTMHVYRVRKHLFHLDRILPKMNWIKAS 484
>Os12g0562100 Conserved hypothetical protein
Length = 591
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 4/208 (1%)
Query: 269 ESWAVYARQEVVLPGVALAFLYFTV-LSFGTLMTATLDWEGIPAYVISLARGVSAAVGIA 327
W Y +Q V+ VA FL F V L+ G +MTA L GI ++ G+ + +G+
Sbjct: 376 NGWNEYKQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGISPSIVGAFSGLCSIMGLV 435
Query: 328 ATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPLASAWMLMGGVAASRLG 387
AT++ + RV L+AG + Q L V + W G + + + +A SRLG
Sbjct: 436 ATFISSSLVERVGILKAGAAGLIVQASLLSVALVVYWTGSISQRTPLLIFLAAIALSRLG 495
Query: 388 LWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFGELIVLSF 447
+D+ Q++Q GVP S ++GG++ S+ S+ +L+ M II +D FG L +LS
Sbjct: 496 HMSYDVVGTQILQTGVPASKANLIGGMEVSISSLAELVMLGMAIIANDVSHFGFLAILSV 555
Query: 448 FLVTCAAAMYTM---HVYRVRKHLFHLD 472
V AA M+ + ++ LF D
Sbjct: 556 SSVAGAAWMFCQWLGNPTDEQRELFMFD 583
>Os05g0131500
Length = 591
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/436 (25%), Positives = 174/436 (39%), Gaps = 15/436 (3%)
Query: 27 LYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVDRXX 86
LY ++W F+ + + P S+L AV G V A GP+VG ++
Sbjct: 149 LYAACLAGNATEQLWNFTWPAAVAVLHPASILPVAVLGFFTKLVVFAAGPLVGELISSLP 208
Query: 87 XXXXXXXXXXXQGASFVAAGVSVTALLVYGARLAAAGF--PAFVALVVVTNVXXXXXXXX 144
Q A+ + + ++T AA+ P F LV T V
Sbjct: 209 RIPAYRSLAAIQTAAHLVSVATITYAFAVHRAAAASLLLRPWFAVLVASTAVDRLACVAL 268
Query: 145 XXXXXXXXEREWVVVIAG-GQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISFVSMEXX 203
ER++VV +AG G+P A L N+ + R+DL C+ + + +S +
Sbjct: 269 GIIA----ERDFVVQLAGAGRPVA-LAKANATLSRVDLLCETVGASIFALLLSKNNPLTC 323
Query: 204 XXXXXXXXXXXXXXQYWLFVSVYAGFPALSETSQISXXXXXXXXXXXXXQPQKVERLWMT 263
+L + + + S+ + + VE T
Sbjct: 324 IKLSCVISLCALPLLIFLCGEMNRLADGIFDHSENTTSHAEKTSSFSIRK--TVEEAVAT 381
Query: 264 MLPCWESWAVYARQEVVLPGVALAFLYFTV-LSFGTLMTATLDWEGIPAYVISLARGVSA 322
+ W+ Y RQ V+ +A F+ F V L+ G LMT L +G+ VI G S
Sbjct: 382 V---RNGWSEYMRQPVLPASLAYVFVCFNVALAPGALMTTFLIHQGVRPSVIGAFGGSSG 438
Query: 323 AVGIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPLASA-WMLMGGV 381
AVGI AT+ + L+AG + AQ L V G + A A + +G +
Sbjct: 439 AVGILATFATARLVKELGILKAGAAGLIAQSALLGAAVVVYLTGAVSRRAGALFAFLGLI 498
Query: 382 AASRLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFGE 441
ASR G + +Q++Q G P S ++G + ++ S+ +L + ++ SD FG
Sbjct: 499 VASRAGHMAYSAIGLQVVQTGNPASKAKLIGATEIAVASLAELAMMAVAVVASDASHFGA 558
Query: 442 LIVLSFFLVTCAAAMY 457
L LS VT AA MY
Sbjct: 559 LAALSATAVTAAAGMY 574
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,519,473
Number of extensions: 476220
Number of successful extensions: 1312
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 158 (65.5 bits)