BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0559400 Os06g0559400|AK068350
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0559400  Conserved hypothetical protein                      296   7e-81
Os02g0227100  Conserved hypothetical protein                       78   5e-15
>Os06g0559400 Conserved hypothetical protein
          Length = 230

 Score =  296 bits (759), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 153/192 (79%), Positives = 153/192 (79%)

Query: 39  TTTLRSPASSSLTDDGGEVTSWTSADGGGGGDYCSFSCXXXXXXXXXXXXXXXXXXXXMM 98
           TTTLRSPASSSLTDDGGEVTSWTSADGGGGGDYCSFSC                    MM
Sbjct: 39  TTTLRSPASSSLTDDGGEVTSWTSADGGGGGDYCSFSCSSESELELESDDDDDEEEEEMM 98

Query: 99  QLDGGGHXXXXXXXXXXXXXXXXXXXRTGLSKYYQGKSQSFTSLCNARCVQDLAKKTTPY 158
           QLDGGGH                   RTGLSKYYQGKSQSFTSLCNARCVQDLAKKTTPY
Sbjct: 99  QLDGGGHAAGGPLYELAAPLLAQLPLRTGLSKYYQGKSQSFTSLCNARCVQDLAKKTTPY 158

Query: 159 ITRMKLQLRRGHGVVDRLSNSRRAPGPCSKTMAKKATRCSSDRLLSRAREHKPLHSSSST 218
           ITRMKLQLRRGHGVVDRLSNSRRAPGPCSKTMAKKATRCSSDRLLSRAREHKPLHSSSST
Sbjct: 159 ITRMKLQLRRGHGVVDRLSNSRRAPGPCSKTMAKKATRCSSDRLLSRAREHKPLHSSSST 218

Query: 219 PAQQSKKELSRC 230
           PAQQSKKELSRC
Sbjct: 219 PAQQSKKELSRC 230
>Os02g0227100 Conserved hypothetical protein
          Length = 199

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 62/103 (60%), Gaps = 2/103 (1%)

Query: 125 RTGLSKYYQGKSQSFTSLCNARCVQDLAKKTTPYITRMKLQLRRGHGVVDRLSNSRRAPG 184
           R GLS YYQGKSQSFTS+ +A CVQDLAKK T Y  RMK       G +D    S   P 
Sbjct: 93  RRGLSNYYQGKSQSFTSISDATCVQDLAKKIT-YNKRMKACKSYAAG-LDMNQRSNHLPK 150

Query: 185 PCSKTMAKKATRCSSDRLLSRAREHKPLHSSSSTPAQQSKKEL 227
           PC+K +AK+ ++ S   LLSR      L SS+  P  QSKK++
Sbjct: 151 PCNKMIAKRPSKGSFTCLLSRPSSTSLLCSSAKPPTHQSKKDV 193
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.126    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,329,030
Number of extensions: 248936
Number of successful extensions: 1414
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1411
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)