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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0227100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.95 (0.052) R2 : 0.68
β1 : 2.34 (0.197) R2dD : 0.11 R2D : -0.0141
β2 : 2.83 (0.123) R2dC : 0.375 R2C : 0.365
β3 : 2.61 (0.205) R2dE : 0.123 R2E : 0.0771
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.45 (0.111) R2dN8 : 0.165 R2N8 : 0.111
σ : 0.971
deviance : 435.08
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_____
C
peak time of C : 23.4
E
wheather : humidity
threshold : 57
memory length : 1418
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.63

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
427.78 0.972 5.97 2.25 2.84 2.62 0.672 1.65 1.46 23.4 57.73 1414 11 1.65
432.53 0.969 5.96 2.39 2.85 2.67 0.824 -- 1.47 23.4 57 1418 11 1.67
429.54 0.965 5.97 2.21 2.82 2.62 -- 1.82 1.45 23.4 57.74 1411 11 1.67
435.08 0.971 5.95 2.34 2.83 2.61 -- -- 1.45 23.4 57 1418 11 1.63
633.26 1.17 5.96 1.99 -- 4.35 -- 1.51 1.11 -- 18.48 2590 12 1.33
588.03 1.14 5.92 1.73 2.91 -- 0.518 -- 1.55 23.4 -- -- -- --
589.18 1.14 5.93 1.7 2.91 -- -- -- 1.55 23.4 -- -- -- --
527.6 1.07 5.97 1.45 -- 3.66 -- -- 1.32 -- -13.8 2233 15.5 3.02
562.11 1.1 5.96 -- 2.85 2.1 -- -- 1.33 23.5 57.71 1396 11.1 2.55
1120.72 1.56 5.86 1.78 -- -- -- -- 1.58 -- -- -- -- --
665.77 1.21 5.97 -- 2.93 -- -- -- 1.36 23.4 -- -- -- --
530.1 1.07 5.98 -- -- 4.8 -- -- 1.34 -- 16.23 2234 14.2 5.63
1204.31 1.62 5.9 -- -- -- -- -- 1.38 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 437.97 humidity 60 14400 < th dose dependent rect. 16 1
2 439.03 humidity 60 1440 > th dose dependent rect. 11 2
12 446.11 humidity 70 14400 < th dose dependent rect. 16 15
14 446.20 humidity 70 14400 < th dose dependent rect. 16 6
26 447.72 humidity 70 1440 > th dose independent rect. 17 21
30 449.14 humidity 90 1440 < th dose dependent rect. 11 2
34 449.27 humidity 90 1440 < th dose dependent rect. 10 4
37 449.64 humidity 70 14400 > th dose independent rect. 17 6
39 449.66 humidity 70 14400 > th dose independent rect. 17 14
43 449.72 humidity 70 14400 > th dose independent rect. 17 12
53 450.60 humidity 70 14400 < th dose independent rect. 17 14
54 450.68 humidity 70 14400 < th dose independent rect. 17 5
122 452.42 humidity 50 14400 > th dose independent rect. 15 3
126 452.68 humidity 50 14400 > th dose independent rect. 15 6
128 452.74 humidity 50 14400 > th dose independent rect. 15 9
132 452.98 humidity 50 14400 > th dose independent rect. 15 17
140 453.13 humidity 50 14400 > th dose independent rect. 15 14
157 453.61 humidity 90 14400 < th dose dependent rect. 17 2
170 454.64 temperature 30 1440 < th dose independent rect. 11 1
172 454.80 humidity 70 1440 > th dose independent rect. 9 23
175 454.94 humidity 70 14400 < th dose dependent sin 12 NA
177 455.02 humidity 70 1440 > th dose independent rect. 9 12
183 455.07 humidity 50 1440 > th dose dependent rect. 8 11
187 455.12 humidity 70 1440 > th dose independent rect. 9 20
189 455.13 humidity 70 1440 > th dose independent rect. 9 18
208 455.35 humidity 50 14400 < th dose independent rect. 16 19
217 455.62 humidity 50 14400 > th dose dependent rect. 17 2
232 456.05 humidity 70 1440 > th dose independent rect. 4 17
237 456.07 humidity 70 1440 > th dose independent rect. 6 15
280 456.17 humidity 70 1440 > th dose independent no NA NA
281 456.17 humidity 70 1440 > th dose independent rect. 6 23
311 456.32 temperature 30 1440 > th dose independent rect. 11 1
319 456.47 humidity 90 1440 < th dose dependent rect. 8 11
322 456.51 temperature 25 1440 > th dose dependent rect. 8 3
335 456.79 humidity 80 1440 < th dose dependent rect. 18 20
354 457.02 humidity 80 1440 < th dose dependent sin 1 NA
371 457.31 humidity 80 1440 < th dose independent rect. 7 8
401 457.62 humidity 50 1440 > th dose dependent sin 23 NA
405 457.68 humidity 70 1440 < th dose independent rect. 16 22
523 458.67 temperature 25 1440 > th dose dependent rect. 7 7
599 459.17 humidity 70 1440 > th dose independent sin 20 NA
608 459.24 humidity 80 1440 > th dose independent rect. 7 8
729 459.93 humidity 60 1440 > th dose independent rect. 12 1
741 460.02 temperature 30 1440 < th dose independent rect. 10 5
768 460.15 humidity 70 14400 < th dose independent sin 12 NA
772 460.17 humidity 80 1440 < th dose dependent no NA NA
780 460.23 humidity 80 1440 < th dose dependent rect. 20 23
794 460.47 humidity 70 1440 > th dose independent sin 10 NA
812 460.57 humidity 60 1440 < th dose independent rect. 12 1
817 460.63 radiation 30 1440 > th dose independent rect. 15 19
866 461.17 humidity 60 14400 > th dose independent rect. 12 1
916 461.47 temperature 30 1440 < th dose independent rect. 3 12
933 461.54 temperature 30 1440 > th dose independent rect. 9 6
935 461.54 temperature 30 1440 < th dose independent rect. 19 20
953 461.64 humidity 60 14400 > th dose independent sin 14 NA
954 461.64 temperature 30 1440 < th dose independent rect. 23 16
985 461.82 temperature 25 1440 > th dose dependent sin 4 NA