BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0227100 Os02g0227100|AK066722
         (199 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56550.1  | chr5:22895847-22896502 REVERSE LENGTH=173           68   3e-12
AT4G26288.1  | chr4:13307623-13308217 FORWARD LENGTH=156           62   3e-10
AT5G24890.1  | chr5:8558357-8559172 REVERSE LENGTH=241             47   6e-06

>AT5G56550.1 | chr5:22895847-22896502 REVERSE LENGTH=173
          Length = 172

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 7/89 (7%)

Query: 78  GPLCDLSSLIAQLPIRRGLSNYYQGKSQSFTSISDATCVQDLAKK----ITYNKRMKACK 133
           GPL DLS L++ LPI+RGLS +Y+GKSQSFTS+ +   ++DL K+      Y  + K+ +
Sbjct: 73  GPLEDLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRKSSR 132

Query: 134 SYAAGLDMNQRSNHLPKPCNKMIAKRPSK 162
           S    LD + +    PK     I+K+P++
Sbjct: 133 STGGILDQSYKRVFSPKAT---ISKKPNR 158



>AT4G26288.1 | chr4:13307623-13308217 FORWARD LENGTH=156
          Length = 155

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 7/59 (11%)

Query: 78  GPLCDLSSLIAQLPI----RRGLSNYYQGKSQSFTSISDATCVQDLAKKITYNKRMKAC 132
           GP  DLS LI+QLPI    + GLS YY+GKSQSFTS+++ T +QDL K+     R K+C
Sbjct: 58  GPFDDLSDLISQLPIIQVKKGGLSKYYKGKSQSFTSLANVTSLQDLVKR---GSRTKSC 113



>AT5G24890.1 | chr5:8558357-8559172 REVERSE LENGTH=241
          Length = 240

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 80  LCDLSSLIAQLPIRRGLSNYYQGKSQSFTSISDATCVQDLAKK---ITYNKRMKACKSYA 136
           L  +SSL   LP +RGLSN+Y+GKS+SF ++ +   V+++AK+   +   +R++ C   A
Sbjct: 95  LASMSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENPLNKRRRLQICNKLA 154



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,214,351
Number of extensions: 91146
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 3
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)