BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0554300 Os06g0554300|AK070137
         (422 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0554300  Conserved hypothetical protein                      687   0.0  
Os03g0726400  Conserved hypothetical protein                       67   2e-11

>Os06g0554300 Conserved hypothetical protein
          Length = 422

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/422 (85%), Positives = 362/422 (85%)

Query: 1   MLHHSNSRHQRNRGSRVKTLLQATLLLGVVVWLMYQVKHSYDKKNEYLEDAENQLAHDDR 60
           MLHHSNSRHQRNRGSRVKTLLQATLLLGVVVWLMYQVKHSYDKKNEYLEDAENQLAHDDR
Sbjct: 1   MLHHSNSRHQRNRGSRVKTLLQATLLLGVVVWLMYQVKHSYDKKNEYLEDAENQLAHDDR 60

Query: 61  SMFQGRKERGGSYGDGILEKGGENPDVVSKPDEENIGETVFEKDNTDSHDDDIRNTDRSK 120
           SMFQGRKERGGSYGDGILEKGGENPDVVSKPDEENIGETVFEKDNTDSHDDDIRNTDRSK
Sbjct: 61  SMFQGRKERGGSYGDGILEKGGENPDVVSKPDEENIGETVFEKDNTDSHDDDIRNTDRSK 120

Query: 121 AGEGHGSSADGNTEANSNDEDGTTNHSEGEXXXXXXXXXXXXXXGEDHSTGDDMPQSNTV 180
           AGEGHGSSADGNTEANSNDEDGTTNHSEGE              GEDHSTGDDMPQSNTV
Sbjct: 121 AGEGHGSSADGNTEANSNDEDGTTNHSEGEKSDAESNSSDAESKGEDHSTGDDMPQSNTV 180

Query: 181 LEESSAETNRMPHEEVAHGDESTNEDQSNVKSDGSNEEEAEKKEAVDSQNASESLSDDAK 240
           LEESSAETNRMPHEEVAHGDESTNEDQSNVKSDGSNEEEAEKKEAVDSQNASESLSDDAK
Sbjct: 181 LEESSAETNRMPHEEVAHGDESTNEDQSNVKSDGSNEEEAEKKEAVDSQNASESLSDDAK 240

Query: 241 GGTDDEHSSGTLPDETGNLPSGQNENSQXXXXXXXXXXXXEAVHIETGSENEDAAKSSGT 300
           GGTDDEHSSGTLPDETGNLPSGQNENSQ            EAVHIETGSENEDAAKSSGT
Sbjct: 241 GGTDDEHSSGTLPDETGNLPSGQNENSQSDATSTTSDASSEAVHIETGSENEDAAKSSGT 300

Query: 301 ASGDDDKGSANEASDSNETKSDEGNVAAEVSNDQAANTXXXXXXXXXXXXXXXXXXXXTK 360
           ASGDDDKGSANEASDSNETKSDEGNVAAEVSNDQAANT                    TK
Sbjct: 301 ASGDDDKGSANEASDSNETKSDEGNVAAEVSNDQAANTEAGNSQEASAAEAANGSSEETK 360

Query: 361 PVENQNDGNTESSNNGEQVDIKMETSASTNAEQKESQVXXXXXXXXXXXXXXAKQTGTTE 420
           PVENQNDGNTESSNNGEQVDIKMETSASTNAEQKESQV              AKQTGTTE
Sbjct: 361 PVENQNDGNTESSNNGEQVDIKMETSASTNAEQKESQVGDGSSGSNGSNDSGAKQTGTTE 420

Query: 421 TQ 422
           TQ
Sbjct: 421 TQ 422



>Os03g0726400 Conserved hypothetical protein
          Length = 410

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 1  MLHHSNSRHQRNRGSRVKTLLQATLLLGVVVWLMYQVKHSYDKKNEYLEDAENQLAHDD 59
          ML  S+SR+ R++G ++K  LQ TLL+ V VWL+YQVKHSY+KK  Y E+  N L  DD
Sbjct: 1  MLRQSSSRNHRSKGLKLKKALQITLLVLVSVWLIYQVKHSYEKK-AYHENEPNDLHKDD 58



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.295    0.117    0.309 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,553,214
Number of extensions: 593310
Number of successful extensions: 3176
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3172
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 318
Effective length of database: 11,605,545
Effective search space: 3690563310
Effective search space used: 3690563310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 157 (65.1 bits)