Os03g0726400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0726400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.41 | 0.222 | 11.7 | 0.171 | 0.277 | -0.419 | 0.273 | -0.669 | 0.406 | 7.09 | 25.51 | 797 | -- | -- |
| 22.48 | 0.223 | 11.7 | 0.0698 | 0.26 | -0.393 | 0.572 | -- | 0.38 | 4.86 | 25.51 | 797 | -- | -- |
| 22.54 | 0.221 | 11.7 | 0.171 | 0.27 | -0.423 | -- | -0.631 | 0.402 | 7.54 | 25.83 | 887 | -- | -- |
| 22.85 | 0.223 | 11.7 | 0.0775 | 0.281 | -0.397 | -- | -- | 0.36 | 6.52 | 25.1 | 388 | -- | -- |
| 25.82 | 0.237 | 11.7 | 0.172 | -- | -0.406 | -- | -0.586 | 0.408 | -- | 25.9 | 1297 | -- | -- |
| 24.89 | 0.234 | 11.7 | 0.156 | 0.23 | -- | 0.389 | -- | 0.46 | 5.93 | -- | -- | -- | -- |
| 25.11 | 0.235 | 11.7 | 0.16 | 0.237 | -- | -- | -- | 0.46 | 6.73 | -- | -- | -- | -- |
| 26.07 | 0.238 | 11.7 | 0.0351 | -- | -0.374 | -- | -- | 0.374 | -- | 25.83 | 1432 | -- | -- |
| 22.88 | 0.223 | 11.7 | -- | 0.28 | -0.404 | -- | -- | 0.373 | 6.57 | 24.89 | 382 | -- | -- |
| 28.05 | 0.247 | 11.7 | 0.166 | -- | -- | -- | -- | 0.464 | -- | -- | -- | -- | -- |
| 25.79 | 0.238 | 11.7 | -- | 0.239 | -- | -- | -- | 0.442 | 6.69 | -- | -- | -- | -- |
| 26.1 | 0.238 | 11.7 | -- | -- | -0.404 | -- | -- | 0.37 | -- | 26.09 | 1429 | -- | -- |
| 28.78 | 0.25 | 11.7 | -- | -- | -- | -- | -- | 0.446 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 7 | 19.39 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 29 | 19.84 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 34 | 19.91 | temperature | 20.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 48 | 20.05 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 52 | 20.08 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 54 | 20.10 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 56 | 20.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 90 | 20.30 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 121 | 20.40 | temperature | 30.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 128 | 20.45 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 136 | 20.47 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 139 | 20.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 160 | 20.57 | temperature | 25.0 | 30 | > th | dose independent | rect. | 21 | 15 |
| 173 | 20.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 19 |
| 335 | 21.00 | temperature | 25.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 413 | 21.13 | temperature | 25.0 | 30 | < th | dose independent | sin | 8 | NA |
| 423 | 21.14 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 6 |
| 455 | 21.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 464 | 21.20 | temperature | 25.0 | 30 | > th | dose independent | sin | 7 | NA |
| 483 | 21.23 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 6 |
| 498 | 21.25 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 8 |
| 519 | 21.28 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 6 |
| 533 | 21.29 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 18 |
| 534 | 21.30 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 540 | 21.30 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 579 | 21.37 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 594 | 21.38 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 601 | 21.39 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 604 | 21.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 607 | 21.40 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 636 | 21.44 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 642 | 21.45 | temperature | 25.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 650 | 21.45 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 704 | 21.50 | temperature | 25.0 | 30 | > th | dose independent | rect. | 2 | 10 |
| 711 | 21.51 | wind | 1.0 | 30 | > th | dose independent | rect. | 6 | 6 |
| 715 | 21.51 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 18 |
| 732 | 21.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 739 | 21.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 743 | 21.53 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 744 | 21.53 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 746 | 21.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 757 | 21.53 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 21 | 15 |
| 759 | 21.54 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 6 |
| 761 | 21.54 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 6 |
| 762 | 21.54 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 6 | 6 |
| 763 | 21.54 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 6 |
| 764 | 21.54 | humidity | 70.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 765 | 21.54 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 18 |
| 769 | 21.54 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 780 | 21.55 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 803 | 21.57 | wind | 9.0 | 30 | < th | dose independent | rect. | 6 | 6 |
| 853 | 21.60 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 873 | 21.61 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 883 | 21.62 | radiation | 40.0 | 10 | < th | dose independent | rect. | 13 | 17 |
| 900 | 21.63 | temperature | 25.0 | 30 | < th | dose independent | rect. | 22 | 8 |
| 941 | 21.65 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 943 | 21.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 968 | 21.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 973 | 21.67 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 18 |
| 985 | 21.67 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 18 |