BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0542200 Os06g0542200|AK058589
         (342 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0542200  NADP oxidoreductase, coenzyme F420-dependent f...   609   e-175
Os06g0709000  NADP oxidoreductase, coenzyme F420-dependent f...   333   1e-91

>Os06g0542200 NADP oxidoreductase, coenzyme F420-dependent family protein
          Length = 342

 Score =  609 bits (1571), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/342 (88%), Positives = 301/342 (88%)

Query: 1   MASSPRHSTHHPTLLLRRHYPNFCALAXXXXXXXXXXXXXXXXXXXXHVGHDXXXXXXXX 60
           MASSPRHSTHHPTLLLRRHYPNFCALA                    HVGHD        
Sbjct: 1   MASSPRHSTHHPTLLLRRHYPNFCALAPLRPTRQLPSLPQQQLQQKQHVGHDPSPSEPTT 60

Query: 61  XXXXXXXXXXXXXLRVGIVGFGNFGQFIAGGIQRQGHAVLATSRSDYSGYCARHGIRFFA 120
                        LRVGIVGFGNFGQFIAGGIQRQGHAVLATSRSDYSGYCARHGIRFFA
Sbjct: 61  AAASPATAAAAGALRVGIVGFGNFGQFIAGGIQRQGHAVLATSRSDYSGYCARHGIRFFA 120

Query: 121 TADELCEAGPDVLLVCSSILSTEAVVRAIPFRKLRPGTLVADVLSVKQFPRNLLLEILPP 180
           TADELCEAGPDVLLVCSSILSTEAVVRAIPFRKLRPGTLVADVLSVKQFPRNLLLEILPP
Sbjct: 121 TADELCEAGPDVLLVCSSILSTEAVVRAIPFRKLRPGTLVADVLSVKQFPRNLLLEILPP 180

Query: 181 GFGIVCTHPMFGPESGKHGWSGLPFVYDKVRVAKEGDQAAKCEQFLSIFEREGCRMVEML 240
           GFGIVCTHPMFGPESGKHGWSGLPFVYDKVRVAKEGDQAAKCEQFLSIFEREGCRMVEML
Sbjct: 181 GFGIVCTHPMFGPESGKHGWSGLPFVYDKVRVAKEGDQAAKCEQFLSIFEREGCRMVEML 240

Query: 241 CEEHDRYAAGSQFITHTIGRILSQLNLESTPINTKGYETLLQLTKNTISDSFDLYYGLFM 300
           CEEHDRYAAGSQFITHTIGRILSQLNLESTPINTKGYETLLQLTKNTISDSFDLYYGLFM
Sbjct: 241 CEEHDRYAAGSQFITHTIGRILSQLNLESTPINTKGYETLLQLTKNTISDSFDLYYGLFM 300

Query: 301 YNVNATEQIDNLDRAFEKVKQMLYGRLHNVLRKQIEERVPIP 342
           YNVNATEQIDNLDRAFEKVKQMLYGRLHNVLRKQIEERVPIP
Sbjct: 301 YNVNATEQIDNLDRAFEKVKQMLYGRLHNVLRKQIEERVPIP 342



>Os06g0709000 NADP oxidoreductase, coenzyme F420-dependent family protein
          Length = 384

 Score =  333 bits (854), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/267 (59%), Positives = 198/267 (74%)

Query: 74  LRVGIVGFGNFGQFIAGGIQRQGHAVLATSRSDYSGYCARHGIRFFATADELCEAGPDVL 133
           L++ +VGFGN+GQF+   + RQGH VLA SRSDYS   A  G  +F  A +L E  PDV+
Sbjct: 85  LKIAVVGFGNYGQFLTRTLVRQGHTVLAHSRSDYSAVAAELGATYFTDAHDLVECHPDVV 144

Query: 134 LVCSSILSTEAVVRAIPFRKLRPGTLVADVLSVKQFPRNLLLEILPPGFGIVCTHPMFGP 193
           L+ +SILS EAV+R++P  +LR  TL ADVLSVK+FPRNLLL  LP  F I+CTHPMFGP
Sbjct: 145 LLVTSILSAEAVLRSLPVHRLRRDTLFADVLSVKEFPRNLLLGTLPEEFDIICTHPMFGP 204

Query: 194 ESGKHGWSGLPFVYDKVRVAKEGDQAAKCEQFLSIFEREGCRMVEMLCEEHDRYAAGSQF 253
           ES   GW GLPFV+DKVRV     + A+ E FL IF REGCRMVEM C EHD +AA +QF
Sbjct: 205 ESAGDGWGGLPFVFDKVRVGDCPARRARAEAFLDIFAREGCRMVEMSCAEHDAHAAETQF 264

Query: 254 ITHTIGRILSQLNLESTPINTKGYETLLQLTKNTISDSFDLYYGLFMYNVNATEQIDNLD 313
           +THT+GR L+ L L++TPINTKGYETLL+L  NT SDSFDLY GLFMYN N+TE ++ L+
Sbjct: 265 LTHTVGRTLAMLELQTTPINTKGYETLLRLVDNTCSDSFDLYNGLFMYNNNSTELLNRLE 324

Query: 314 RAFEKVKQMLYGRLHNVLRKQIEERVP 340
            A + VK+ L+  LH+VLR+Q+ E  P
Sbjct: 325 WAMDSVKKRLFDGLHDVLRRQLFEGSP 351



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,140,685
Number of extensions: 368915
Number of successful extensions: 1053
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1052
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)