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Os06g0709000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NADP oxidoreductase, coenzyme F420-dependent family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.7 (0.0209) R2 : 0.62
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.47 (0.0543) R2dC : 0.611 R2C : 0.598
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.196 (0.044) R2dN8 : 0.0215 R2N8 : 0.00906
σ : 0.394
deviance : 70.92
__
_____
C
peak time of C : 7.05
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.19 0.355 8.7 0.674 0.638 1.92 -0.173 -0.305 -0.0564 13 0.6512 695 -- --
57.29 0.353 8.7 0.661 0.654 1.91 -0.0911 -- -0.0599 13 0.66 689 -- --
57.27 0.352 8.7 0.665 0.647 1.92 -- -0.215 -0.0558 13 0.6855 692 -- --
57.3 0.353 8.7 0.657 0.694 1.95 -- -- -0.0581 13.2 0.6541 683 -- --
63.76 0.372 8.71 0.699 -- 2.01 -- -0.227 -0.0512 -- 1.08 864 -- --
64.66 0.377 8.69 0.488 1.46 -- -0.0436 -- -0.142 7.07 -- -- -- --
64.67 0.377 8.69 0.487 1.46 -- -- -- -0.142 7.07 -- -- -- --
63.88 0.372 8.71 0.674 -- 2.02 -- -- -0.0537 -- 1.08 864 -- --
67.54 0.383 8.71 -- 0.687 1.35 -- -- -0.147 10.5 0.8395 660 -- --
177.14 0.622 8.72 0.516 -- -- -- -- -0.116 -- -- -- -- --
70.92 0.394 8.7 -- 1.47 -- -- -- -0.196 7.05 -- -- -- --
75.12 0.404 8.73 -- -- 1.94 -- -- -0.127 -- 1.96 852 -- --
184.15 0.633 8.74 -- -- -- -- -- -0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.17 temperature 15.0 270 > th dose dependent rect. 20 5
2 45.24 temperature 10.0 270 > th dose dependent rect. 19 7
10 47.18 temperature 20.0 270 > th dose independent rect. 20 5
28 48.23 temperature 15.0 270 > th dose independent rect. 6 20
31 48.43 temperature 10.0 270 > th dose dependent rect. 7 18
33 48.53 temperature 15.0 270 > th dose independent rect. 7 18
34 48.53 radiation 1.0 270 < th dose dependent rect. 2 17
35 48.57 radiation 1.0 270 < th dose independent rect. 2 16
47 48.85 temperature 10.0 90 > th dose dependent rect. 9 17
66 49.41 temperature 10.0 270 > th dose dependent rect. 20 15
74 49.54 precipitation 0.1 270 < th dose independent rect. 6 20
75 49.54 precipitation 0.1 270 < th dose dependent rect. 6 20
77 49.55 atmosphere 995.0 270 > th dose independent rect. 6 20
84 49.62 radiation 1.0 270 < th dose independent rect. 2 12
90 49.68 radiation 1.0 270 < th dose dependent sin 2 NA
93 49.73 temperature 15.0 270 > th dose independent rect. 21 14
95 49.75 precipitation 0.1 270 < th dose independent rect. 2 4
96 49.75 precipitation 0.1 270 < th dose dependent rect. 2 4
99 49.77 radiation 1.0 270 < th dose independent sin 2 NA
105 49.89 wind 7.0 270 < th dose independent rect. 2 4
106 49.90 radiation 20.0 270 < th dose dependent rect. 2 4
110 49.91 temperature 10.0 270 > th dose independent rect. 2 4
112 49.91 temperature 30.0 270 < th dose independent rect. 2 4
113 49.91 humidity 50.0 270 > th dose independent rect. 2 4
116 49.91 atmosphere 995.0 270 > th dose independent rect. 2 4
117 49.91 atmosphere 1015.0 270 < th dose independent rect. 2 4
118 49.91 radiation 20.0 270 < th dose independent rect. 2 4
124 49.93 radiation 1.0 270 < th dose independent rect. 2 4
129 49.94 wind 9.0 270 < th dose independent rect. 6 20
132 49.96 radiation 1.0 270 < th dose dependent rect. 2 12
143 50.03 radiation 1.0 270 > th dose independent sin 2 NA
147 50.10 radiation 1.0 270 < th dose dependent rect. 2 8
150 50.12 atmosphere 995.0 270 > th dose independent rect. 7 18
158 50.15 precipitation 0.1 270 < th dose independent rect. 7 18
160 50.15 precipitation 0.1 270 < th dose dependent rect. 7 18
190 50.35 precipitation 0.1 270 < th dose independent rect. 1 6
192 50.35 precipitation 0.1 270 < th dose dependent rect. 1 6
197 50.39 wind 9.0 270 < th dose dependent rect. 2 4
200 50.41 wind 7.0 270 < th dose independent rect. 1 6
202 50.42 atmosphere 1015.0 270 < th dose independent rect. 6 20
206 50.47 humidity 70.0 270 > th dose independent rect. 1 6
208 50.48 temperature 10.0 270 > th dose independent rect. 1 6
210 50.48 temperature 30.0 270 < th dose independent rect. 1 6
211 50.48 humidity 50.0 270 > th dose independent rect. 1 6
213 50.48 atmosphere 995.0 270 > th dose independent rect. 1 6
214 50.48 atmosphere 1015.0 270 < th dose independent rect. 1 6
218 50.49 atmosphere 1015.0 270 < th dose independent rect. 7 18
220 50.50 wind 9.0 270 < th dose independent rect. 7 18
244 50.65 atmosphere 1010.0 270 < th dose independent rect. 20 5
260 50.68 wind 1.0 270 > th dose independent rect. 1 5
308 50.89 humidity 50.0 270 > th dose dependent rect. 2 4
311 50.91 atmosphere 1015.0 270 < th dose dependent rect. 20 5
331 50.98 radiation 40.0 270 < th dose dependent rect. 15 15
374 51.10 atmosphere 995.0 270 > th dose dependent rect. 2 4
438 51.30 radiation 40.0 270 < th dose independent rect. 13 17
440 51.31 radiation 10.0 43200 < th dose dependent rect. 21 7
464 51.44 wind 9.0 270 < th dose dependent rect. 1 6
486 51.48 temperature 10.0 270 > th dose independent rect. 11 10
488 51.48 atmosphere 995.0 270 > th dose independent rect. 21 14
502 51.54 wind 9.0 270 < th dose independent rect. 21 14
506 51.55 atmosphere 995.0 270 > th dose independent rect. 6 9
512 51.57 wind 9.0 270 < th dose dependent rect. 3 2
528 51.62 humidity 50.0 270 > th dose dependent rect. 1 6
534 51.64 precipitation 0.1 270 < th dose independent rect. 21 14
537 51.64 precipitation 0.1 270 < th dose dependent rect. 21 14
543 51.68 humidity 50.0 270 > th dose independent rect. 15 15
546 51.69 humidity 50.0 270 > th dose independent rect. 21 14
572 51.77 precipitation 0.1 270 < th dose independent rect. 6 9
576 51.77 precipitation 0.1 270 < th dose dependent rect. 6 9
582 51.79 wind 9.0 270 < th dose independent rect. 6 9
583 51.79 radiation 1.0 270 > th dose independent rect. 6 9
588 51.80 temperature 10.0 270 > th dose dependent rect. 2 4
592 51.81 temperature 30.0 270 < th dose dependent rect. 2 3
626 51.87 precipitation 0.1 270 < th dose independent rect. 19 7
627 51.87 precipitation 0.1 270 < th dose dependent rect. 19 7
634 51.91 humidity 50.0 270 > th dose dependent rect. 3 2
635 51.92 temperature 10.0 270 > th dose independent rect. 6 9
636 51.92 atmosphere 1015.0 270 < th dose independent rect. 6 9
637 51.92 wind 9.0 270 < th dose independent rect. 15 15
638 51.92 temperature 10.0 270 > th dose independent rect. 15 15
654 51.97 temperature 30.0 270 < th dose dependent rect. 1 5
670 52.01 wind 9.0 270 < th dose independent rect. 11 10
673 52.02 humidity 60.0 270 > th dose independent rect. 19 7
692 52.05 precipitation 0.1 270 < th dose independent rect. 20 5
694 52.05 temperature 30.0 270 < th dose independent rect. 19 7
696 52.05 atmosphere 995.0 270 > th dose independent rect. 19 7
697 52.05 radiation 1.0 270 < th dose independent rect. 19 7
702 52.05 temperature 10.0 270 > th dose independent rect. 2 17
703 52.05 atmosphere 1015.0 270 < th dose independent rect. 2 17
705 52.05 precipitation 0.1 270 < th dose dependent rect. 20 5
706 52.05 radiation 1.0 270 < th dose dependent rect. 19 7
713 52.06 radiation 1.0 270 > th dose independent rect. 17 22
750 52.14 humidity 50.0 270 > th dose independent rect. 6 9
760 52.17 wind 9.0 270 < th dose independent rect. 19 7
789 52.25 radiation 1.0 270 < th dose dependent rect. 20 5
793 52.26 temperature 30.0 270 < th dose independent rect. 20 5
794 52.26 humidity 50.0 270 > th dose independent rect. 20 5
797 52.26 atmosphere 995.0 270 > th dose independent rect. 20 5
798 52.26 radiation 1.0 270 < th dose independent rect. 20 5
806 52.26 temperature 10.0 270 > th dose independent rect. 1 19
807 52.26 atmosphere 1015.0 270 < th dose independent rect. 1 19
814 52.27 atmosphere 1015.0 270 < th dose independent rect. 11 9
843 52.33 precipitation 0.1 270 < th dose independent rect. 2 17
846 52.33 precipitation 0.1 270 < th dose dependent rect. 2 17
853 52.35 wind 9.0 270 < th dose independent rect. 20 5
864 52.38 wind 1.0 270 > th dose independent rect. 11 10
869 52.39 wind 9.0 270 < th dose independent rect. 2 17
914 52.46 atmosphere 1015.0 270 < th dose independent rect. 21 14
955 52.54 temperature 20.0 10 > th dose independent rect. 22 15
956 52.54 wind 9.0 270 < th dose independent rect. 1 19
968 52.56 radiation 30.0 90 < th dose dependent rect. 14 19
978 52.58 precipitation 0.1 270 < th dose independent rect. 1 19
979 52.58 precipitation 0.1 270 < th dose dependent rect. 1 19
997 52.63 temperature 10.0 10 > th dose dependent rect. 22 15