BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0525000 Os06g0525000|AK119757
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0525000  Conserved hypothetical protein                      221   2e-58
Os06g0524500  Conserved hypothetical protein                       94   6e-20

>Os06g0525000 Conserved hypothetical protein
          Length = 191

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 120/173 (69%)

Query: 19  AHAAGRRRQPQSPLALRRLKDQGFKALRWYGEPXXXXXXXXXXXXXXXXXXXXXCARVRT 78
           AHAAGRRRQPQSPLALRRLKDQGFKALRWYGEP                     CARVRT
Sbjct: 19  AHAAGRRRQPQSPLALRRLKDQGFKALRWYGEPGEAHAASASASAPTGAGGRASCARVRT 78

Query: 79  XXXXXXXXXXXXXXXXXXXXXXTLREQWLFAVRQYSRWYSHAWGTAIXXXXXXXXXXWLV 138
                                 TLREQWLFAVRQYSRWYSHAWGTAI          WLV
Sbjct: 79  GPPGDGGGGYPNPPDAAIPDAATLREQWLFAVRQYSRWYSHAWGTAILAGAAFFGLGWLV 138

Query: 139 KGSNPLPSRAEPHASNAKEEGLPKVLAGEPSPRVSRSRRACGAPSRSLLPPST 191
           KGSNPLPSRAEPHASNAKEEGLPKVLAGEPSPRVSRSRRACGAPSRSLLPPST
Sbjct: 139 KGSNPLPSRAEPHASNAKEEGLPKVLAGEPSPRVSRSRRACGAPSRSLLPPST 191



>Os06g0524500 Conserved hypothetical protein
          Length = 114

 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 46/58 (79%)

Query: 101 TLREQWLFAVRQYSRWYSHAWGTAIXXXXXXXXXXWLVKGSNPLPSRAEPHASNAKEE 158
           TLREQW FAVRQYSRWYSHAWGTAI          WLVKGSNPLPSRAE HASNAKEE
Sbjct: 55  TLREQWRFAVRQYSRWYSHAWGTAILAGAAFFGLGWLVKGSNPLPSRAEHHASNAKEE 112



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,770,882
Number of extensions: 162719
Number of successful extensions: 608
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)