Os06g0525000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0525000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.92 | 0.301 | 8.01 | 0.597 | 0.183 | -1.67 | 0.254 | -0.652 | 0.242 | 19.9 | 28.5 | 23 | -- | -- |
| 41.5 | 0.3 | 8.02 | 0.5 | 0.189 | -1.63 | 0.167 | -- | 0.215 | 19.1 | 28.56 | 22 | -- | -- |
| 41.01 | 0.298 | 8.01 | 0.59 | 0.196 | -1.63 | -- | -0.58 | 0.249 | 19 | 28.5 | 19 | -- | -- |
| 41.54 | 0.3 | 8.02 | 0.493 | 0.197 | -1.62 | -- | -- | 0.226 | 18.9 | 28.6 | 20 | -- | -- |
| 42.8 | 0.305 | 8 | 0.582 | -- | -1.68 | -- | -0.629 | 0.245 | -- | 28.71 | 39 | -- | -- |
| 77.83 | 0.414 | 7.94 | 0.887 | 0.62 | -- | 0.0975 | -- | 0.567 | 15.4 | -- | -- | -- | -- |
| 77.86 | 0.413 | 7.94 | 0.888 | 0.62 | -- | -- | -- | 0.567 | 15.4 | -- | -- | -- | -- |
| 43.37 | 0.307 | 8.01 | 0.473 | -- | -1.67 | -- | -- | 0.219 | -- | 28.9 | 41 | -- | -- |
| 47.28 | 0.32 | 8.04 | -- | 0.185 | -1.82 | -- | -- | 0.134 | 20.5 | 28.63 | 19 | -- | -- |
| 99.5 | 0.466 | 7.94 | 0.862 | -- | -- | -- | -- | 0.551 | -- | -- | -- | -- | -- |
| 98.67 | 0.465 | 7.96 | -- | 0.603 | -- | -- | -- | 0.468 | 15.4 | -- | -- | -- | -- |
| 48.88 | 0.326 | 8.03 | -- | -- | -1.82 | -- | -- | 0.139 | -- | 28.72 | 50 | -- | -- |
| 119.11 | 0.509 | 7.96 | -- | -- | -- | -- | -- | 0.455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 40.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 4 | 40.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 5 | 41.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 6 | 41.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 7 | 41.40 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 11 | 41.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 12 | 41.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 17 | 41.81 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 21 | 41.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 22 | 41.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 25 | 42.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 26 | 42.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 29 | 42.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 56 | 43.53 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 76 | 44.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 82 | 44.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 125 | 45.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 128 | 45.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 146 | 45.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 168 | 46.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 186 | 46.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 205 | 46.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 211 | 46.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 20 |
| 216 | 46.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 228 | 47.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 246 | 47.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 257 | 47.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 258 | 47.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 263 | 47.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 389 | 48.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 464 | 49.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 544 | 49.56 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 23 |
| 586 | 49.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 615 | 49.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 635 | 49.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 778 | 50.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 779 | 50.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 784 | 50.27 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 805 | 50.31 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 813 | 50.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 818 | 50.34 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 23 |
| 835 | 50.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 837 | 50.37 | temperature | 25 | 30 | < th | dose independent | rect. | 11 | 23 |
| 866 | 50.43 | temperature | 20 | 30 | > th | dose dependent | sin | 8 | NA |
| 874 | 50.45 | temperature | 25 | 30 | < th | dose independent | rect. | 23 | 23 |
| 885 | 50.47 | temperature | 25 | 30 | < th | dose independent | no | NA | NA |
| 886 | 50.47 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 894 | 50.48 | temperature | 25 | 30 | < th | dose independent | rect. | 15 | 23 |
| 907 | 50.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 909 | 50.51 | temperature | 25 | 30 | < th | dose independent | rect. | 17 | 23 |
| 938 | 50.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 939 | 50.56 | temperature | 25 | 30 | < th | dose independent | rect. | 9 | 23 |
| 955 | 50.59 | temperature | 25 | 30 | < th | dose independent | rect. | 19 | 23 |
| 966 | 50.61 | temperature | 25 | 30 | < th | dose independent | rect. | 21 | 23 |
| 970 | 50.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 17 |