Os06g0524500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0524500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.64 | 0.192 | 11.7 | 0.11 | 0.186 | -0.179 | -0.555 | -0.78 | 0.167 | 17.5 | 30.13 | 66 | -- | -- |
| 16.76 | 0.191 | 11.7 | 0.16 | 0.171 | -0.233 | -0.648 | -- | 0.171 | 17.2 | 30.2 | 65 | -- | -- |
| 17.23 | 0.193 | 11.7 | 0.0401 | 0.197 | -0.142 | -- | -1.1 | 0.164 | 17.7 | 29.22 | 112 | -- | -- |
| 17.51 | 0.195 | 11.7 | 0.175 | 0.19 | -0.295 | -- | -- | 0.164 | 17.8 | 30.3 | 68 | -- | -- |
| 18.97 | 0.203 | 11.7 | 0.0189 | -- | -0.0491 | -- | -1.07 | 0.157 | -- | 29.21 | 108 | -- | -- |
| 18.48 | 0.202 | 11.7 | 0.137 | 0.118 | -- | -0.728 | -- | 0.189 | 17.4 | -- | -- | -- | -- |
| 19.7 | 0.208 | 11.7 | 0.138 | 0.121 | -- | -- | -- | 0.185 | 18.7 | -- | -- | -- | -- |
| 19.15 | 0.204 | 11.7 | 0.159 | -- | -0.213 | -- | -- | 0.163 | -- | 30.32 | 56 | -- | -- |
| 18.3 | 0.199 | 11.7 | -- | 0.181 | -0.272 | -- | -- | 0.144 | 17.8 | 30.3 | 68 | -- | -- |
| 20.47 | 0.211 | 11.7 | 0.135 | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
| 20.21 | 0.21 | 11.7 | -- | 0.119 | -- | -- | -- | 0.17 | 18.7 | -- | -- | -- | -- |
| 19.8 | 0.207 | 11.7 | -- | -- | -0.205 | -- | -- | 0.148 | -- | 30.51 | 55 | -- | -- |
| 20.95 | 0.214 | 11.7 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 5 | 15.50 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 18 |
| 12 | 15.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 16 | 15.63 | radiation | 30.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 17 | 15.63 | radiation | 30.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 35 | 15.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 43 | 15.80 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 51 | 15.83 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 53 | 15.84 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 62 | 15.87 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 72 | 15.90 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 81 | 15.92 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 88 | 15.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 17 |
| 90 | 15.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 99 | 15.97 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 118 | 16.01 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 128 | 16.02 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 151 | 16.07 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 153 | 16.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 158 | 16.09 | humidity | 60.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 160 | 16.09 | humidity | 80.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 161 | 16.09 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 165 | 16.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 17 |
| 170 | 16.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 171 | 16.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 172 | 16.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 173 | 16.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 177 | 16.11 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 180 | 16.11 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 206 | 16.13 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 216 | 16.13 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 222 | 16.14 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 229 | 16.14 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 252 | 16.15 | humidity | 90.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 256 | 16.15 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 269 | 16.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 270 | 16.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 287 | 16.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 356 | 16.23 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 359 | 16.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 7 |
| 366 | 16.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 384 | 16.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 16 |
| 394 | 16.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 422 | 16.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 485 | 16.31 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 487 | 16.31 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 13 | 8 |
| 509 | 16.32 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 548 | 16.33 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 564 | 16.34 | temperature | 15.0 | 10 | > th | dose independent | rect. | 8 | 18 |
| 573 | 16.34 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 2 | 8 |
| 608 | 16.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 643 | 16.38 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 662 | 16.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 663 | 16.39 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 670 | 16.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 684 | 16.39 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 729 | 16.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 17 |
| 757 | 16.42 | temperature | 15.0 | 10 | > th | dose independent | rect. | 10 | 16 |
| 782 | 16.42 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 792 | 16.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 797 | 16.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 822 | 16.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 823 | 16.44 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 824 | 16.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 831 | 16.44 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 8 | 18 |
| 844 | 16.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 863 | 16.45 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 18 |
| 920 | 16.46 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 939 | 16.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 963 | 16.47 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 9 |