BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0524500 Os06g0524500|AK066466
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28540.1  | chr1:10035696-10036007 FORWARD LENGTH=104           74   1e-14

>AT1G28540.1 | chr1:10035696-10036007 FORWARD LENGTH=104
          Length = 103

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 55  TLREQWRFAVRQYSRWYSHAWGTAIXXXXXXXXXXWLVKGSNPLPSRAEHHASNAKEEE 113
           TLREQW+FA+RQYS+WYSHAWGTAI          W++KGSNPLPS     +S  ++EE
Sbjct: 46  TLREQWKFAIRQYSKWYSHAWGTAILAGGFFFGLGWIIKGSNPLPSL--QSSSKPRDEE 102



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.126    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,340,167
Number of extensions: 29636
Number of successful extensions: 38
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)