BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0523300 Os06g0523300|AK105345
         (98 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0523300  Conserved hypothetical protein                      145   7e-36
Os02g0258800  Conserved hypothetical protein                      110   2e-25
Os01g0221400  Conserved hypothetical protein                       87   3e-18

>Os06g0523300 Conserved hypothetical protein
          Length = 98

 Score =  145 bits (365), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/77 (89%), Positives = 69/77 (89%)

Query: 22 QQPSTERKETSSAFXXXXXXXXFQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGV 81
          QQPSTERKETSSAF        FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGV
Sbjct: 22 QQPSTERKETSSAFGGGCCGGGFQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGV 81

Query: 82 EEKRRFAMGAFLWPDQY 98
          EEKRRFAMGAFLWPDQY
Sbjct: 82 EEKRRFAMGAFLWPDQY 98



>Os02g0258800 Conserved hypothetical protein
          Length = 94

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 53/55 (96%)

Query: 44 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLWPDQY 98
          F+MPLHYPRYKKA+YEAMPEWRVDCLLREYGLPVDG ++ KRRFAMGAFLWPDQY
Sbjct: 40 FRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGDLDAKRRFAMGAFLWPDQY 94



>Os01g0221400 Conserved hypothetical protein
          Length = 79

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query: 44 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLW 94
          FQMPLHYPRY+K DYE MPEW++D LL EYGLPVDG ++ KR FA+GAFLW
Sbjct: 20 FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLW 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,638,308
Number of extensions: 87117
Number of successful extensions: 157
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 3
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)