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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0258800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.16 (0.0699) R2 : 0.871
β1 : -0.422 (0.277) R2dD : 0.00083 R2D : 0.00324
β2 : 7.58 (0.217) R2dC : 0.579 R2C : 0.764
β3 : -1.56 (0.157) R2dE : 0.047 R2E : 0.259
β4 : 5.09 (0.807) R2dD*C : 0.0164 R2D*C : -0.00913
β5 : 5.05 (0.664) R2dD*E : 0.0282 R2D*E : 0.00286
γ1 : -1.27 (0.15) R2dN8 : 0.0286 R2N8 : 0.0227
σ : 1.29
deviance : 757.07
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_____
C
peak time of C : 9.46
E
wheather : temperature
threshold : 20.1
memory length : 10
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 14.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
757.07 1.29 9.16 -0.422 7.58 -1.56 5.09 5.05 -1.27 9.46 20.1 10 16 14.1
838.65 1.36 9.27 -1.12 7.34 -1.73 1.65 -- -1.49 9.33 19.4 23 16.6 13.4
822.59 1.35 9.2 -0.67 7.5 -1.61 -- 2.73 -1.35 9.43 20.1 15 16 14.6
841.65 1.35 9.27 -1.03 7.25 -1.81 -- -- -1.49 9.31 19.21 22 16.6 13.7
992.33 1.47 9.38 -2.03 -- -7.25 -- -1.16 -1.72 -- -34.76 300 13.4 12.3
995.5 1.48 9.26 -1.57 8.83 -- 2.01 -- -1.63 9.7 -- -- -- --
1010.87 1.49 9.26 -1.49 8.82 -- -- -- -1.63 9.71 -- -- -- --
971.93 1.45 9.52 -1.38 -- -7.48 -- -- -1.71 -- -38.2 340 13 12.2
868.89 1.37 9.27 -- 7.18 -1.91 -- -- -1.4 9.3 19.3 16 16.2 14.5
5637.64 3.51 9.5 -1.57 -- -- -- -- -1.61 -- -- -- -- --
1069.69 1.53 9.22 -- 8.83 -- -- -- -1.46 9.72 -- -- -- --
1027.39 1.49 9.48 -- -- -7.53 -- -- -1.53 -- -18.46 343 13 12.2
5703 3.52 9.46 -- -- -- -- -- -1.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 758.59 temperature 20.0 10 > th dose independent rect. 16 14
2 761.50 temperature 20.0 10 > th dose independent rect. 16 12
13 795.82 temperature 20.0 10 > th dose independent sin 12 NA
17 798.39 temperature 20.0 10 > th dose independent rect. 18 12
51 818.19 temperature 20.0 10 > th dose independent rect. 20 10
57 821.59 radiation 10.0 1440 < th dose independent rect. 11 11
58 821.59 radiation 10.0 1440 < th dose independent rect. 11 13
59 821.60 radiation 10.0 1440 < th dose independent rect. 11 9
62 821.69 radiation 10.0 1440 < th dose independent rect. 11 17
65 821.88 radiation 10.0 1440 < th dose independent rect. 11 15
73 825.47 temperature 20.0 10 > th dose independent rect. 16 20
97 829.51 temperature 20.0 10 < th dose independent sin 12 NA
111 830.91 radiation 10.0 1440 < th dose independent sin 16 NA
113 830.97 temperature 20.0 90 < th dose independent sin 13 NA
117 832.07 radiation 20.0 1440 < th dose dependent rect. 11 2
152 837.39 temperature 20.0 90 < th dose independent rect. 19 10
153 837.94 temperature 20.0 30 > th dose independent rect. 7 23
172 838.99 temperature 20.0 90 < th dose independent rect. 17 12
180 840.46 temperature 20.0 10 < th dose independent rect. 20 8
191 841.76 temperature 20.0 90 < th dose independent rect. 15 14
194 842.02 temperature 20.0 10 < th dose independent rect. 18 10
196 842.19 radiation 20.0 1440 < th dose independent rect. 11 2
203 843.01 radiation 10.0 1440 < th dose dependent rect. 11 19
206 843.44 temperature 20.0 90 < th dose independent rect. 13 16
216 844.64 temperature 20.0 10 < th dose independent rect. 16 12
217 844.68 radiation 10.0 1440 < th dose dependent rect. 10 5
218 844.76 temperature 15.0 10 > th dose dependent rect. 16 12
227 845.33 humidity 60.0 720 > th dose independent rect. 15 4
265 846.99 radiation 1.0 1440 > th dose dependent rect. 12 1
271 847.14 temperature 20.0 10 < th dose independent rect. 14 14
298 848.32 radiation 10.0 1440 < th dose dependent rect. 10 12
299 848.32 radiation 10.0 1440 < th dose dependent rect. 10 14
300 848.34 radiation 10.0 1440 < th dose dependent rect. 10 10
313 848.68 radiation 10.0 1440 < th dose dependent rect. 10 16
325 849.03 precipitation 0.1 270 > th dose independent rect. 2 2
326 849.05 temperature 15.0 10 > th dose dependent rect. 16 14
336 849.22 radiation 10.0 1440 > th dose independent rect. 11 2
360 849.84 precipitation 0.1 270 > th dose dependent rect. 2 2
385 850.66 temperature 20.0 10 > th dose independent rect. 16 18
390 850.87 temperature 15.0 270 > th dose dependent rect. 15 12
438 852.13 radiation 10.0 1440 < th dose dependent sin 20 NA
538 855.05 atmosphere 1005.0 720 < th dose independent rect. 20 5
581 856.10 radiation 30.0 720 < th dose independent rect. 15 4
656 858.49 precipitation 0.1 270 > th dose independent rect. 20 8
714 860.41 atmosphere 1005.0 720 < th dose independent rect. 20 1
757 861.47 temperature 20.0 270 < th dose independent rect. 23 1