BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0258800 Os02g0258800|J100069L21
         (94 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0258800  Conserved hypothetical protein                      158   7e-40
Os06g0523300  Conserved hypothetical protein                      118   9e-28
Os01g0221400  Conserved hypothetical protein                       84   2e-17

>Os02g0258800 Conserved hypothetical protein
          Length = 94

 Score =  158 bits (400), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 79/94 (84%)

Query: 1  MGSLGPSVVGLQPKAEKTTAAAXXXXXXXXXXXXXXXSSFRMPLHYPRYKKAEYEAMPEW 60
          MGSLGPSVVGLQPKAEKTTAAA               SSFRMPLHYPRYKKAEYEAMPEW
Sbjct: 1  MGSLGPSVVGLQPKAEKTTAAAGGEQQHGGGGGGCGGSSFRMPLHYPRYKKAEYEAMPEW 60

Query: 61 RVDCLLREYGLPVDGDLDAKRRFAMGAFLWPDQY 94
          RVDCLLREYGLPVDGDLDAKRRFAMGAFLWPDQY
Sbjct: 61 RVDCLLREYGLPVDGDLDAKRRFAMGAFLWPDQY 94



>Os06g0523300 Conserved hypothetical protein
          Length = 98

 Score =  118 bits (296), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 69/105 (65%), Gaps = 18/105 (17%)

Query: 1  MGSLGPSVV-----------GLQPKAEKTTAAAXXXXXXXXXXXXXXXSSFRMPLHYPRY 49
          MGSLGP+VV           G QP  E+   ++                 F+MPLHYPRY
Sbjct: 1  MGSLGPAVVVSASAAKMAGGGQQPSTERKETSSAFGGGCCG-------GGFQMPLHYPRY 53

Query: 50 KKAEYEAMPEWRVDCLLREYGLPVDGDLDAKRRFAMGAFLWPDQY 94
          KKA+YEAMPEWRVDCLLREYGLPVDG ++ KRRFAMGAFLWPDQY
Sbjct: 54 KKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLWPDQY 98



>Os01g0221400 Conserved hypothetical protein
          Length = 79

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 44/51 (86%)

Query: 40 FRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGDLDAKRRFAMGAFLW 90
          F+MPLHYPRY+K +YE MPEW++D LL EYGLPVDG+L  KR FA+GAFLW
Sbjct: 20 FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLW 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,965,935
Number of extensions: 90830
Number of successful extensions: 142
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 17,035,801
Length adjustment: 63
Effective length of query: 31
Effective length of database: 13,746,319
Effective search space: 426135889
Effective search space used: 426135889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)