BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0258800 Os02g0258800|J100069L21
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41761.1 | chr5:16711437-16711742 FORWARD LENGTH=102 87 1e-18
AT3G55570.1 | chr3:20610166-20610671 REVERSE LENGTH=110 78 8e-16
AT3G09950.1 | chr3:3060354-3060632 REVERSE LENGTH=93 72 7e-14
AT3G11405.1 | chr3:3580895-3581359 FORWARD LENGTH=155 65 7e-12
AT5G55620.1 | chr5:22530373-22530678 FORWARD LENGTH=102 64 2e-11
AT5G06010.1 | chr5:1809940-1810263 FORWARD LENGTH=108 52 7e-08
>AT5G41761.1 | chr5:16711437-16711742 FORWARD LENGTH=102
Length = 101
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 46/53 (86%)
Query: 38 SSFRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGDLDAKRRFAMGAFLW 90
SSF++PLHYP+Y K++YE MPEW++D LLREYGLPV GD KR+FA+GAFLW
Sbjct: 43 SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLW 95
>AT3G55570.1 | chr3:20610166-20610671 REVERSE LENGTH=110
Length = 109
Score = 78.2 bits (191), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 41/53 (77%)
Query: 38 SSFRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGDLDAKRRFAMGAFLW 90
S FRMPLHYPRY K +Y+ MPEW++D +L +YGL GDL KR FA+GAFLW
Sbjct: 30 SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82
>AT3G09950.1 | chr3:3060354-3060632 REVERSE LENGTH=93
Length = 92
Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 38 SSFRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPV--DGDLDAKRRFAMGAFLWPDQ 93
S F+MPLHYPRY K +YE M EWR+D LL EYGL D L KR FA+ F+WP
Sbjct: 34 SGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWPHH 91
>AT3G11405.1 | chr3:3580895-3581359 FORWARD LENGTH=155
Length = 154
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 40 FRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVD-GDLDAKRRFAMGAFLW 90
F+MPL YP Y K +Y+ M E +D LL+ YGLP D G+L K+ FA+GAFLW
Sbjct: 57 FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108
>AT5G55620.1 | chr5:22530373-22530678 FORWARD LENGTH=102
Length = 101
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 38 SSFRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGDLDAKRRFAMGAFLWPDQ 93
S F++PLHYP+Y K++YE M + R+D LL++YG +G L+ KR FA+ +FLWPDQ
Sbjct: 45 SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQ 100
>AT5G06010.1 | chr5:1809940-1810263 FORWARD LENGTH=108
Length = 107
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 42 MPLHYPRYKKAEYEAMPEWRVDCLLREYGL-PVDGDLDAKRRFAMGAFLW 90
MPL YP YKK +YE M E +D LL YG+ V GDL KR+FA F W
Sbjct: 49 MPLLYPCYKKEDYEKMSEETIDMLLATYGIMTVPGDLADKRKFAFETFRW 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,792,717
Number of extensions: 51960
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 6
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)