BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0507200 Os06g0507200|AK107785
(149 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0507200 Glutelin family protein 210 4e-55
Os12g0269200 Similar to Prolamin precursor 79 9e-16
M23745 70 4e-13
>Os06g0507200 Glutelin family protein
Length = 149
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 109/149 (73%)
Query: 1 MKIFVIXXXXXXXXXXXXXQFDACTYGQCQQQPFMQPIMNPCNEFVRQQCSPMSLPWEQS 60
MKIFVI QFDACTYGQCQQQPFMQPIMNPCNEFVRQQCSPMSLPWEQS
Sbjct: 1 MKIFVILSLLALAASSASAQFDACTYGQCQQQPFMQPIMNPCNEFVRQQCSPMSLPWEQS 60
Query: 61 RRLQLSSXXXXXXXXXXXXXXXXXXYHCQAICTMVQSIMQQVQFDAGFVGEPXXXXXXXX 120
RRLQLSS YHCQAICTMVQSIMQQVQFDAGFVGEP
Sbjct: 61 RRLQLSSCQVMRQQCCQQMRLMAQQYHCQAICTMVQSIMQQVQFDAGFVGEPQAQAQAQV 120
Query: 121 XLNLPSMCGVYPRYCSTPCKVATGHCGSW 149
LNLPSMCGVYPRYCSTPCKVATGHCGSW
Sbjct: 121 ALNLPSMCGVYPRYCSTPCKVATGHCGSW 149
>Os12g0269200 Similar to Prolamin precursor
Length = 156
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 1 MKIFVIXXXXXXXXXXXXXQFDACT--YGQCQQQPFM---QPIMNPCNEFVRQQCSPMSL 55
MKI QFDA T Y Q Q QP + Q +++PC EFVRQQCS ++
Sbjct: 1 MKIIFFFALLAIAACSASAQFDAVTQVYRQYQLQPHLMLQQQMLSPCGEFVRQQCSTVAT 60
Query: 56 PWEQSRRLQLSSXXXXXXXXXXXXXXXXXXYHCQAICTMVQSIMQQV---QFDAGFVGEP 112
P+ QS QL + HCQAI + VQ+I+QQ+ QF + + +
Sbjct: 61 PFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAISS-VQAIVQQLRLQQFASVYFDQS 119
Query: 113 XXXXXXXXXLNLPSMCGVYPRYCSTPCKVAT 143
LN+PS+CG+YP Y + PC + T
Sbjct: 120 QAQAQAMLALNMPSICGIYPSYNTAPCSIPT 150
>M23745
Length = 149
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 1 MKIFVIXXXXXXXXXXXXXQFDACT--YGQCQQQPFMQPIMNPCNEFVRQQCSPMSLPWE 58
MKI QFDA T Y Q Q Q Q +++PC EFVRQQCS ++ P+
Sbjct: 1 MKIIFFFALLAEAACSASAQFDAVTQVYRQYQLQ---QQMLSPCGEFVRQQCSTVATPFF 57
Query: 59 QSRRLQLSSXXXXXXXXXXXXXXXXXXYHCQAICTMVQSIMQQV---QFDAGFVGEPXXX 115
QS QL + HCQAI + VQ+I+QQ+ QF + +
Sbjct: 58 QSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAISS-VQAIVQQLQLQQFSGVYFDQAQAQ 116
Query: 116 XXXXXXLNLPSMCGVYPRYCSTPCKVATGHCGSW 149
LNLPS+CG+YP Y + P G G W
Sbjct: 117 AQAMLGLNLPSICGIYPSYNTVPEIPTVG--GIW 148
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.136 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,560,043
Number of extensions: 87961
Number of successful extensions: 210
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 4
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)