BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0499000 Os06g0499000|J100068L03
         (206 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0499000  Conserved hypothetical protein                      357   4e-99
Os03g0862100  Conserved hypothetical protein                       75   2e-14

>Os06g0499000 Conserved hypothetical protein
          Length = 206

 Score =  357 bits (915), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   NTRCLQPHKPVTKAQAAAALTSGRMEEVIRDELNRLEAENQSQLSVMGEIMEELINRGDI 60
           NTRCLQPHKPVTKAQAAAALTSGRMEEVIRDELNRLEAENQSQLSVMGEIMEELINRGDI
Sbjct: 1   NTRCLQPHKPVTKAQAAAALTSGRMEEVIRDELNRLEAENQSQLSVMGEIMEELINRGDI 60

Query: 61  KRYWEDKMKVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMNL 120
           KRYWEDKMKVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMNL
Sbjct: 61  KRYWEDKMKVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMNL 120

Query: 121 RSEIDGMYDRLAMESLEVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKEALTMLRSW 179
           RSEIDGMYDRLAMESLEVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKEALTMLRSW
Sbjct: 121 RSEIDGMYDRLAMESLEVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKEALTMLRSW 179



>Os03g0862100 Conserved hypothetical protein
          Length = 918

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 101/187 (54%), Gaps = 18/187 (9%)

Query: 2   TRCLQPHKPVTKAQAAAALTSGRMEEVIRDELNRLEAENQSQLSVMGEIMEELIN-RGDI 60
           TR  QP KPVTK Q A AL++G   +V+ +EL R+EAE         +I E+ +N  G++
Sbjct: 579 TRLFQPDKPVTKGQVALALSTGDSADVVMEELARIEAE---------KIAEDAVNAHGEL 629

Query: 61  KRYWEDKMKVEEIREVAVDKQLQHVLQELANE--------KTDREKELAVLLKERTALEH 112
               E  +     RE+  +++    L++LA E        + +R +E   L++ R ++E 
Sbjct: 630 VAQVEKDLNATFERELTKEREKIERLEKLAEEARVELDKLRAERVEENNALIRGRASVES 689

Query: 113 QNQELMNLRSEIDGMYDRLAMESLEVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKEA 172
           + + L  LRSE++     +  + +E+  E+  +EKL  ++    QAV + +  LE E++A
Sbjct: 690 EMEVLSKLRSEVEEQLQSVLSKKVEISFEKNRIEKLQTEIENDRQAVVQLQYELEVERKA 749

Query: 173 LTMLRSW 179
           L+M R+W
Sbjct: 750 LSMARAW 756



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.125    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,743,795
Number of extensions: 161164
Number of successful extensions: 849
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 110
Effective length of database: 12,023,257
Effective search space: 1322558270
Effective search space used: 1322558270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)