BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0485100 Os06g0485100|AK068560
         (234 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0485100  Conserved hypothetical protein                      453   e-128
Os06g0483900  Homeodomain-like containing protein                 200   8e-52
Os09g0346900  Conserved hypothetical protein                      137   6e-33

>Os06g0485100 Conserved hypothetical protein
          Length = 234

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/234 (94%), Positives = 222/234 (94%)

Query: 1   MCRYDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLP 60
           MCRYDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLP
Sbjct: 1   MCRYDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLP 60

Query: 61  GDLILCFQEGKEQALYFDACVLDAQXXXXXXXXXXXXFLVRYDHDHSEEIVPLRKVCRRP 120
           GDLILCFQEGKEQALYFDACVLDAQ            FLVRYDHDHSEEIVPLRKVCRRP
Sbjct: 61  GDLILCFQEGKEQALYFDACVLDAQRRRHDVRGCRCRFLVRYDHDHSEEIVPLRKVCRRP 120

Query: 121 ETDYRLQILHAARAAGMAKEAVVDLVSHNDKSSAEQKPPKQHKMMDVNTDEVTMVSNQDQ 180
           ETDYRLQILHAARAAGMAKEAVVDLVSHNDKSSAEQKPPKQHKMMDVNTDEVTMVSNQDQ
Sbjct: 121 ETDYRLQILHAARAAGMAKEAVVDLVSHNDKSSAEQKPPKQHKMMDVNTDEVTMVSNQDQ 180

Query: 181 EEPTGKPAATLPAAPVKTLNDSASASASDVQMGEAQAAPKVESSDEVEDKMKEG 234
           EEPTGKPAATLPAAPVKTLNDSASASASDVQMGEAQAAPKVESSDEVEDKMKEG
Sbjct: 181 EEPTGKPAATLPAAPVKTLNDSASASASDVQMGEAQAAPKVESSDEVEDKMKEG 234



>Os06g0483900 Homeodomain-like containing protein
          Length = 330

 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 114/143 (79%)

Query: 4   YDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLPGDL 63
           YDVAAFLSHRL +SG+ EV VRFSGFGA +DEWI+VR CVRQRS PC STEC AVLPGD 
Sbjct: 186 YDVAAFLSHRLSQSGELEVWVRFSGFGARDDEWIDVRTCVRQRSHPCVSTECAAVLPGDQ 245

Query: 64  ILCFQEGKEQALYFDACVLDAQXXXXXXXXXXXXFLVRYDHDHSEEIVPLRKVCRRPETD 123
           ILCFQEGK QALYFDA VLDAQ            FLV YDHD SEEIVPLRK+CRRPETD
Sbjct: 246 ILCFQEGKHQALYFDAHVLDAQKRRHDARGCRCRFLVCYDHDDSEEIVPLRKMCRRPETD 305

Query: 124 YRLQILHAARAAGMAKEAVVDLV 146
           YRL+ILHAA AA  AKEAVVD V
Sbjct: 306 YRLEILHAAGAANAAKEAVVDSV 328



>Os09g0346900 Conserved hypothetical protein
          Length = 269

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 84/118 (71%)

Query: 4   YDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLPGDL 63
           YD+A FL++R   SG+ EVRVRF GFGAEEDEWINVRK +R +S+P ES+EC  +  GDL
Sbjct: 150 YDIATFLAYRKLSSGEFEVRVRFQGFGAEEDEWINVRKAIRLQSIPLESSECKLIREGDL 209

Query: 64  ILCFQEGKEQALYFDACVLDAQXXXXXXXXXXXXFLVRYDHDHSEEIVPLRKVCRRPE 121
           +LCF+E  ++AL+FDA VL+ Q            FLV YDHD ++E V LR++ RRP+
Sbjct: 210 VLCFKESNDEALHFDAHVLEIQRKQHDIRGCRCVFLVEYDHDGTQERVNLRRLSRRPK 267



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,844,866
Number of extensions: 309097
Number of successful extensions: 1153
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 3
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)