Os06g0483900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os06g0483900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.69 | 0.541 | 6.16 | -0.657 | 0.417 | 0.551 | 0.523 | -2.01 | 0.466 | 14.2 | 10.28 | 1491 | -- | -- |
| 138.49 | 0.548 | 6.13 | -0.331 | 0.466 | 0.576 | 0.535 | -- | 0.524 | 14.4 | 10.29 | 1535 | -- | -- |
| 133.54 | 0.538 | 6.16 | -0.661 | 0.426 | 0.532 | -- | -2 | 0.475 | 14.7 | 10.29 | 1487 | -- | -- |
| 138.54 | 0.548 | 6.12 | -0.35 | 0.399 | 0.557 | -- | -- | 0.575 | 14.7 | 10.03 | 1556 | -- | -- |
| 142.07 | 0.555 | 6.14 | -0.567 | -- | 0.582 | -- | -1.88 | 0.505 | -- | 10.04 | 1618 | -- | -- |
| 145.25 | 0.565 | 6.07 | -0.204 | 0.455 | -- | 0.348 | -- | 0.733 | 14.3 | -- | -- | -- | -- |
| 145.64 | 0.565 | 6.07 | -0.194 | 0.459 | -- | -- | -- | 0.736 | 14.6 | -- | -- | -- | -- |
| 144.89 | 0.561 | 6.13 | -0.379 | -- | 0.785 | -- | -- | 0.547 | -- | 10.03 | 1706 | -- | -- |
| 140.34 | 0.552 | 6.09 | -- | 0.332 | 0.571 | -- | -- | 0.672 | 14.8 | 6.75 | 1582 | -- | -- |
| 158.01 | 0.587 | 6.08 | -0.214 | -- | -- | -- | -- | 0.724 | -- | -- | -- | -- | -- |
| 146.63 | 0.566 | 6.07 | -- | 0.463 | -- | -- | -- | 0.757 | 14.6 | -- | -- | -- | -- |
| 143.04 | 0.557 | 6.09 | -- | -- | 0.827 | -- | -- | 0.657 | -- | 5.492 | 1738 | -- | -- |
| 159.21 | 0.589 | 6.07 | -- | -- | -- | -- | -- | 0.748 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.53 | wind | 3 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 2 | 127.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 9 | 128.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 4 |
| 27 | 129.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 36 | 129.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 38 | 129.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 45 | 129.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 48 | 129.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 54 | 129.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 56 | 129.48 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 63 | 129.56 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 79 | 129.72 | radiation | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 86 | 129.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 94 | 130.03 | wind | 3 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 118 | 130.28 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 131 | 130.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 140 | 130.57 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 164 | 130.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 170 | 130.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 181 | 130.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 203 | 131.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 228 | 131.17 | wind | 3 | 4320 | < th | dose independent | rect. | 23 | 10 |
| 264 | 131.49 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 285 | 131.55 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 16 |
| 292 | 131.56 | wind | 1 | 4320 | > th | dose dependent | rect. | 2 | 2 |
| 339 | 131.69 | wind | 1 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 340 | 131.71 | wind | 3 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 374 | 131.79 | temperature | 15 | 30 | > th | dose independent | rect. | 3 | 23 |
| 382 | 131.80 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 419 | 131.88 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 455 | 132.00 | wind | 3 | 4320 | > th | dose independent | rect. | 23 | 11 |
| 458 | 132.02 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 481 | 132.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 508 | 132.09 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 523 | 132.13 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 524 | 132.13 | wind | 1 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 525 | 132.14 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 527 | 132.14 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 8 |
| 574 | 132.26 | wind | 1 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 600 | 132.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 604 | 132.32 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 661 | 132.44 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 674 | 132.47 | wind | 3 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 684 | 132.49 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 19 |
| 700 | 132.56 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 758 | 132.67 | wind | 1 | 4320 | > th | dose dependent | rect. | 1 | 6 |
| 759 | 132.68 | humidity | 80 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 760 | 132.68 | humidity | 80 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 762 | 132.69 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 773 | 132.73 | wind | 3 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 807 | 132.82 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 23 |
| 822 | 132.85 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 826 | 132.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 878 | 132.97 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 23 |
| 891 | 133.00 | humidity | 80 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 898 | 133.02 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 908 | 133.07 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 915 | 133.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 956 | 133.15 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 23 |
| 959 | 133.16 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 23 |
| 960 | 133.16 | wind | 3 | 4320 | < th | dose dependent | sin | 9 | NA |
| 962 | 133.16 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 7 |