Os06g0485100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0485100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.15 | 0.195 | 12.2 | 0.638 | 0.232 | -0.494 | -0.0499 | 0.545 | 0.108 | 7.61 | 6.289 | 10 | -- | -- |
| 17.7 | 0.196 | 12.2 | 0.665 | 0.242 | -0.526 | 0.175 | -- | 0.114 | 8.11 | 6.19 | 9 | -- | -- |
| 17.15 | 0.193 | 12.2 | 0.637 | 0.232 | -0.495 | -- | 0.523 | 0.109 | 7.63 | 6.33 | 9 | -- | -- |
| 17.78 | 0.196 | 12.2 | 0.658 | 0.229 | -0.505 | -- | -- | 0.111 | 7.6 | 7.882 | 9 | -- | -- |
| 19.72 | 0.207 | 12.2 | 0.639 | -- | -0.47 | -- | 0.415 | 0.127 | -- | 13.95 | 60 | -- | -- |
| 21.67 | 0.218 | 12.2 | 0.649 | 0.272 | -- | -0.282 | -- | 0.113 | 3.71 | -- | -- | -- | -- |
| 21.9 | 0.219 | 12.2 | 0.653 | 0.271 | -- | -- | -- | 0.115 | 3.86 | -- | -- | -- | -- |
| 19.76 | 0.207 | 12.2 | 0.65 | -- | -0.507 | -- | -- | 0.138 | -- | 17.6 | 140 | -- | -- |
| 28.13 | 0.247 | 12.2 | -- | 0.243 | -0.645 | -- | -- | 0.0429 | 5.69 | 37.96 | 77 | -- | -- |
| 25.94 | 0.238 | 12.2 | 0.664 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 33.14 | 0.269 | 12.2 | -- | 0.284 | -- | -- | -- | 0.0421 | 3.83 | -- | -- | -- | -- |
| 30.11 | 0.256 | 12.2 | -- | -- | -0.78 | -- | -- | 0.0455 | -- | 47.56 | 157 | -- | -- |
| 37.58 | 0.286 | 12.2 | -- | -- | -- | -- | -- | 0.0483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.85 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 7 | 16.95 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 16 |
| 30 | 17.00 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 31 | 17.01 | radiation | 1 | 10 | > th | dose dependent | sin | 0 | NA |
| 34 | 17.03 | radiation | 10 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 110 | 17.18 | radiation | 30 | 90 | < th | dose independent | rect. | 4 | 14 |
| 118 | 17.23 | radiation | 10 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 119 | 17.23 | radiation | 10 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 151 | 17.26 | radiation | 10 | 10 | > th | dose dependent | no | NA | NA |
| 292 | 17.30 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 293 | 17.30 | radiation | 10 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 320 | 17.36 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 18 |
| 436 | 17.41 | radiation | 40 | 10 | < th | dose dependent | sin | 1 | NA |
| 454 | 17.44 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 481 | 17.48 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 534 | 17.50 | radiation | 30 | 10 | < th | dose independent | sin | 3 | NA |
| 566 | 17.52 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 615 | 17.55 | radiation | 30 | 10 | > th | dose independent | rect. | 9 | 3 |
| 671 | 17.57 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 824 | 17.61 | radiation | 30 | 10 | > th | dose independent | rect. | 15 | 21 |
| 876 | 17.62 | radiation | 10 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 958 | 17.68 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 990 | 17.70 | radiation | 20 | 270 | < th | dose independent | sin | 7 | NA |