BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0485100 Os06g0485100|AK068560
         (234 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18380.2  | chr3:6311002-6313181 REVERSE LENGTH=350            199   1e-51
AT1G15215.2  | chr1:5238096-5239770 FORWARD LENGTH=259            127   5e-30

>AT3G18380.2 | chr3:6311002-6313181 REVERSE LENGTH=350
          Length = 349

 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/216 (51%), Positives = 134/216 (62%), Gaps = 30/216 (13%)

Query: 4   YDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLPGDL 63
           YDV AFL+HR  E GDPEV+VRF+GF  EEDEWINV+K VRQRSLPCE++ECVAVL GDL
Sbjct: 156 YDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDL 215

Query: 64  ILCFQEGKEQALYFDACVLDAQXXXXXXXXXXXXFLVRYDHDHSE-EIVPLRKVCRRPET 122
           +LCFQEGK+QALYFDA VLDAQ            FLVRY HD SE EIVPLRK+CRRPET
Sbjct: 216 VLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPET 275

Query: 123 DYRLQILHAARAAGMAKEAVVDLVSHNDKSSAEQKPPKQHKMMDVNTDEVTMVSNQDQEE 182
           DYRLQ LH          AV DL + N           QH++  ++    T         
Sbjct: 276 DYRLQQLH---------NAVNDLANSN-----------QHQIPALDAAAKT--------- 306

Query: 183 PTGKPAATLPAAPVKTLNDSASASASDVQMGEAQAA 218
           P   P AT+P    ++ + S SA+ + +    + AA
Sbjct: 307 PLSLPGATVPIVAPESKDPSLSATPATLVQPSSNAA 342



>AT1G15215.2 | chr1:5238096-5239770 FORWARD LENGTH=259
          Length = 258

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 82/118 (69%)

Query: 4   YDVAAFLSHRLFESGDPEVRVRFSGFGAEEDEWINVRKCVRQRSLPCESTECVAVLPGDL 63
           YDV++FL++R+  +G+ EVRVRFSGF    DEW+NV+  VR+RS+P E +EC  V  GDL
Sbjct: 140 YDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDL 199

Query: 64  ILCFQEGKEQALYFDACVLDAQXXXXXXXXXXXXFLVRYDHDHSEEIVPLRKVCRRPE 121
           +LCFQE ++QALY D  VL+ +            FLVRY+ D++EE + L ++CRRPE
Sbjct: 200 LLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRRPE 257



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,901,625
Number of extensions: 186080
Number of successful extensions: 670
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 139
Effective length of database: 8,502,049
Effective search space: 1181784811
Effective search space used: 1181784811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)