BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0364500 Os06g0364500|AK107497
         (327 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0364500  Conserved hypothetical protein                      628   e-180
Os05g0409100  Conserved hypothetical protein                       83   3e-16

>Os06g0364500 Conserved hypothetical protein
          Length = 327

 Score =  628 bits (1619), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/327 (93%), Positives = 307/327 (93%)

Query: 1   MEIHLHLHFLAILVVVPMLGSPAAGGLCRDSCGGIPVRYPLSIDDGCGSPYYRNMLTCAD 60
           MEIHLHLHFLAILVVVPMLGSPAAGGLCRDSCGGIPVRYPLSIDDGCGSPYYRNMLTCAD
Sbjct: 1   MEIHLHLHFLAILVVVPMLGSPAAGGLCRDSCGGIPVRYPLSIDDGCGSPYYRNMLTCAD 60

Query: 61  NATLRLRTPSGTYPVVGADYADPHLVVTDPSMWTCERPFTSVRAAPFSLDTSTRFSLSPR 120
           NATLRLRTPSGTYPVVGADYADPHLVVTDPSMWTCERPFTSVRAAPFSLDTSTRFSLSPR
Sbjct: 61  NATLRLRTPSGTYPVVGADYADPHLVVTDPSMWTCERPFTSVRAAPFSLDTSTRFSLSPR 120

Query: 121 NDYLFFDCDEERVIVEPRPAVCDRYPERCDSTCDSAGYLCRNLPGCRGALEENNMSCCAY 180
           NDYLFFDCDEERVIVEPRPAVCDRYPERCDSTCDSAGYLCRNLPGCRGALEENNMSCCAY
Sbjct: 121 NDYLFFDCDEERVIVEPRPAVCDRYPERCDSTCDSAGYLCRNLPGCRGALEENNMSCCAY 180

Query: 181 RPRAAESLRLMLRHCESYTSVYWRAVGDKFPPYDQVPAYGVRVDFEIPVTTRCLQCEDRR 240
           RPRAAESLRLMLRHCESYTSVYWRAVGDKFPPYDQVPAYGVRVDFEIPVTTRCLQCEDRR
Sbjct: 181 RPRAAESLRLMLRHCESYTSVYWRAVGDKFPPYDQVPAYGVRVDFEIPVTTRCLQCEDRR 240

Query: 241 RGAGGTCGFDPVTRDFVCICNDARNSTTDCADGPASRYHXXXXXXXXXXXXXXXXXXXXT 300
           RGAGGTCGFDPVTRDFVCICNDARNSTTDCADGPASRYH                    T
Sbjct: 241 RGAGGTCGFDPVTRDFVCICNDARNSTTDCADGPASRYHSSAGVVAASAVFSISAAVGIT 300

Query: 301 GLVWYIRKIKSTKVVTCGVQSNENRFF 327
           GLVWYIRKIKSTKVVTCGVQSNENRFF
Sbjct: 301 GLVWYIRKIKSTKVVTCGVQSNENRFF 327



>Os05g0409100 Conserved hypothetical protein
          Length = 318

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 109/261 (41%), Gaps = 32/261 (12%)

Query: 28  CRDSCGGIPVRYPLSIDDGCGSPYYRNMLTCADNATLRLRTPSGTYPVVGADYADPHLVV 87
           CR  CG I V YP ++  GCG   +R +L C  N  L L  PSG+Y V+  DYA   L +
Sbjct: 38  CRSFCGNITVDYPFALRAGCGHAGFRELLYCI-NGALMLHLPSGSYRVLDIDYAYRGLTL 96

Query: 88  TDPSMWTCERPFTSVRAAPFSLDTSTRFSLSP-RNDYLFFDCDEERVIVEPRPA--VCDR 144
            DP+M  C R     R           F + P R  YL  D D   +++  R +  +   
Sbjct: 97  HDPAMSDC-RALDRSRGG-----RGNGFVVEPWRAPYLAPDPDNVFLLLGCRASSPLFQG 150

Query: 145 YPERCDSTCDSAGYLCRNLPGC-------------RGALEENNMSCCAYRPRAAESLRLM 191
           +P+R     + +G  C    GC                       CCA    A  ++ + 
Sbjct: 151 FPDRHLPCRNVSGMGCGEYYGCPAWDDYGGRRPSGAAYGAAAPPECCAVSWDAIRAVNVS 210

Query: 192 LRHCESYTSVYWRAVGDKFPPYDQVPAYGVRVDFEIPVTTR--CLQCEDRRRGAGGTCGF 249
              CE Y+S Y  A      P     AYG+RV + +P   R  C  C    R  GG CG 
Sbjct: 211 RLECEGYSSAYSLAPVRAAGPAGW--AYGIRVSWALPEANRGFCGAC----RATGGVCGH 264

Query: 250 DPVTRDFVCICNDARNSTTDC 270
           D  +   +C+C D  NST++C
Sbjct: 265 DGDSHGDLCLCGD-WNSTSNC 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,720,387
Number of extensions: 583222
Number of successful extensions: 1451
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)