BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0339800 Os06g0339800|J075035B01
         (114 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0339800  Ribosomal protein L30, bacterial family protein     159   3e-40
Os08g0110100  Ribosomal protein L30 family protein                139   6e-34

>Os06g0339800 Ribosomal protein L30, bacterial family protein
          Length = 114

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/96 (83%), Positives = 80/96 (83%)

Query: 1  MSGSAFKAFKSRVEVAWSPKLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGML 60
          MSGSAFKAFKSRVEVAWSPKLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGML
Sbjct: 1  MSGSAFKAFKSRVEVAWSPKLVRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGML 60

Query: 61 TQVKCLVVVETQEMYXXXXXXXXXXXXXXXXLIVSH 96
          TQVKCLVVVETQEMY                LIVSH
Sbjct: 61 TQVKCLVVVETQEMYAARRQAEEDRRAPRPPLIVSH 96



>Os08g0110100 Ribosomal protein L30 family protein
          Length = 116

 Score =  139 bits (349), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 75/100 (75%), Gaps = 4/100 (4%)

Query: 1   MSGSAFKAFKSRVEVAWSPKL----VRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSL 56
           MSGSAF AFKSRV VAWSPKL    VRGLPGTRRLHR TLEAM LRRCHRTVEHRTTPSL
Sbjct: 1   MSGSAFNAFKSRVAVAWSPKLYITLVRGLPGTRRLHRRTLEAMRLRRCHRTVEHRTTPSL 60

Query: 57  LGMLTQVKCLVVVETQEMYXXXXXXXXXXXXXXXXLIVSH 96
           LGMLTQVK LVVVETQEMY                L+VSH
Sbjct: 61  LGMLTQVKRLVVVETQEMYAARRQAEDDRRAPRPPLVVSH 100



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,533,163
Number of extensions: 76765
Number of successful extensions: 241
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 17,035,801
Length adjustment: 81
Effective length of query: 33
Effective length of database: 12,806,467
Effective search space: 422613411
Effective search space used: 422613411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)