Os06g0339800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L30, bacterial family protein.
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Os06g0339800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L30, bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.98 | 0.592 | 4.66 | 1.54 | 0.302 | -1.39 | 0.279 | 0.305 | 0.102 | 11.9 | 21.91 | 797 | -- | -- |
| 159.26 | 0.588 | 4.68 | 1.46 | 0.303 | -1.39 | 0.223 | -- | 0.0779 | 11.9 | 21.9 | 796 | -- | -- |
| 159.28 | 0.588 | 4.67 | 1.52 | 0.3 | -1.39 | -- | 0.202 | 0.0967 | 12 | 21.91 | 796 | -- | -- |
| 159.41 | 0.588 | 4.67 | 1.46 | 0.3 | -1.39 | -- | -- | 0.0819 | 12 | 21.92 | 796 | -- | -- |
| 164.61 | 0.598 | 4.67 | 1.55 | -- | -1.48 | -- | 0.193 | 0.119 | -- | 21.95 | 829 | -- | -- |
| 238 | 0.723 | 4.77 | 0.979 | 0.56 | -- | 0.189 | -- | -0.358 | 11.1 | -- | -- | -- | -- |
| 238.15 | 0.723 | 4.77 | 0.987 | 0.559 | -- | -- | -- | -0.357 | 11.1 | -- | -- | -- | -- |
| 164.7 | 0.598 | 4.67 | 1.49 | -- | -1.48 | -- | -- | 0.107 | -- | 21.91 | 831 | -- | -- |
| 210.08 | 0.675 | 4.72 | -- | 0.338 | -1.06 | -- | -- | -0.137 | 11.5 | 22.2 | 739 | -- | -- |
| 257.65 | 0.75 | 4.78 | 0.974 | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
| 263.84 | 0.76 | 4.79 | -- | 0.551 | -- | -- | -- | -0.467 | 11 | -- | -- | -- | -- |
| 217.22 | 0.686 | 4.73 | -- | -- | -1.15 | -- | -- | -0.126 | -- | 22.26 | 784 | -- | -- |
| 282.69 | 0.785 | 4.8 | -- | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 33 | 162.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 36 | 162.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 38 | 162.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 40 | 163.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 42 | 163.06 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 52 | 163.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 78 | 163.94 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 88 | 164.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 95 | 164.29 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 98 | 164.31 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 113 | 164.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 121 | 164.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 174 | 166.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 176 | 166.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 192 | 166.83 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 212 | 167.20 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 246 | 167.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 268 | 168.19 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 273 | 168.26 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 287 | 168.52 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 337 | 169.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 383 | 170.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 423 | 170.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 493 | 171.58 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 532 | 171.86 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 585 | 172.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 642 | 172.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 660 | 172.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 739 | 173.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 747 | 173.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 866 | 173.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 915 | 173.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 926 | 173.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 939 | 173.86 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 944 | 173.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 948 | 173.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |