BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0339800 Os06g0339800|J075035B01
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55140.1  | chr5:22381370-22381787 FORWARD LENGTH=110          100   1e-22

>AT5G55140.1 | chr5:22381370-22381787 FORWARD LENGTH=110
          Length = 109

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 4/97 (4%)

Query: 4  SAFKAFKSRVEVAWSPKL----VRGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLLGM 59
          S F+AFK++V + WS  L    VRGLPGTR+LHR TLEAM LRRCHRTV H    S+ GM
Sbjct: 2  SGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGM 61

Query: 60 LTQVKCLVVVETQEMYXXXXXXXXXXXXXXXXLIVSH 96
          + QVK +VVVET+EMY                L+VSH
Sbjct: 62 IDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSH 98



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,552,861
Number of extensions: 44307
Number of successful extensions: 94
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)