Os08g0110100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L30 family protein.
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Os08g0110100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L30 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.66 | 0.256 | 9.98 | 0.124 | 0.335 | -0.476 | -0.0478 | 0.284 | -0.0767 | 10.8 | 20 | 848 | -- | -- |
| 29.71 | 0.254 | 9.98 | 0.119 | 0.347 | -0.479 | 0.0274 | -- | -0.078 | 10.9 | 19.86 | 873 | -- | -- |
| 29.54 | 0.253 | 9.98 | 0.112 | 0.337 | -0.469 | -- | 0.278 | -0.0793 | 11.1 | 19.99 | 878 | -- | -- |
| 29.67 | 0.254 | 9.98 | 0.122 | 0.34 | -0.467 | -- | -- | -0.0737 | 11 | 19.86 | 880 | -- | -- |
| 32.37 | 0.265 | 9.99 | 0.122 | -- | -0.49 | -- | 0.162 | -0.0533 | -- | 26.22 | 297 | -- | -- |
| 34.35 | 0.275 | 9.97 | 0.159 | 0.302 | -- | -0.0794 | -- | -0.0104 | 14.7 | -- | -- | -- | -- |
| 34.37 | 0.275 | 9.97 | 0.157 | 0.302 | -- | -- | -- | -0.0109 | 14.7 | -- | -- | -- | -- |
| 31.64 | 0.262 | 9.98 | 0.107 | -- | -0.421 | -- | -- | -0.0524 | -- | 19.26 | 287 | -- | -- |
| 29.86 | 0.254 | 9.99 | -- | 0.387 | -0.515 | -- | -- | -0.106 | 11.1 | 14.43 | 941 | -- | -- |
| 39.67 | 0.294 | 9.97 | 0.144 | -- | -- | -- | -- | -0.0186 | -- | -- | -- | -- | -- |
| 35.02 | 0.277 | 9.98 | -- | 0.299 | -- | -- | -- | -0.0284 | 14.7 | -- | -- | -- | -- |
| 32.09 | 0.264 | 9.98 | -- | -- | -0.413 | -- | -- | -0.0607 | -- | 19.64 | 287 | -- | -- |
| 40.22 | 0.296 | 9.98 | -- | -- | -- | -- | -- | -0.0346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.57 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 2 | 28.77 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 6 | 29.00 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 13 | 29.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 16 | 29.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 18 | 29.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 29 | 29.24 | radiation | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 43 | 29.31 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 4 |
| 58 | 29.35 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 82 | 29.49 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 17 |
| 94 | 29.55 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 17 |
| 97 | 29.56 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 111 | 29.61 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 17 |
| 148 | 29.69 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 186 | 29.79 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 3 |
| 208 | 29.84 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 222 | 29.88 | radiation | 10 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 234 | 29.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 237 | 29.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 253 | 29.93 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 17 |
| 268 | 29.95 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 3 |
| 309 | 29.97 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 14 |
| 318 | 29.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 350 | 30.01 | humidity | 60 | 30 | > th | dose independent | rect. | 5 | 13 |
| 377 | 30.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 407 | 30.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 410 | 30.06 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 15 |
| 437 | 30.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 461 | 30.09 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 474 | 30.11 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 506 | 30.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 518 | 30.13 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 580 | 30.18 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 611 | 30.19 | humidity | 60 | 270 | > th | dose independent | rect. | 3 | 14 |
| 641 | 30.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 690 | 30.23 | humidity | 50 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 734 | 30.25 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 774 | 30.27 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 798 | 30.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 799 | 30.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 801 | 30.29 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 15 |
| 831 | 30.30 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 833 | 30.30 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 911 | 30.33 | radiation | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |