BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0325500 Os06g0325500|AK063974
         (365 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0325500  Protein of unknown function DUF89 family protein    714   0.0  
Os09g0533100  Similar to Pantothenate kinase 4 (Fragment)         172   3e-43

>Os06g0325500 Protein of unknown function DUF89 family protein
          Length = 365

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/365 (96%), Positives = 352/365 (96%)

Query: 1   MESSSPSVPFPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRA 60
           MESSSPSVPFPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRA
Sbjct: 1   MESSSPSVPFPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRA 60

Query: 61  ENDPTVPDAPAKAEKFAQRYTAMLEELKKNPESNGGPPDCIXXXXXXXXXXXXXGFRDIF 120
           ENDPTVPDAPAKAEKFAQRYTAMLEELKKNPESNGGPPDCI             GFRDIF
Sbjct: 61  ENDPTVPDAPAKAEKFAQRYTAMLEELKKNPESNGGPPDCILLCRLRELVLRELGFRDIF 120

Query: 121 KKVKDEENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEVFAKDG 180
           KKVKDEENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEVFAKDG
Sbjct: 121 KKVKDEENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEVFAKDG 180

Query: 181 MSFLASCQNLVSRPWVIDDLDAFQNKWTKKSWEKAVIFVDNSGADIILGILPFARELLRH 240
           MSFLASCQNLVSRPWVIDDLDAFQNKWTKKSWEKAVIFVDNSGADIILGILPFARELLRH
Sbjct: 181 MSFLASCQNLVSRPWVIDDLDAFQNKWTKKSWEKAVIFVDNSGADIILGILPFARELLRH 240

Query: 241 GTKVILAANDMPSINDVTYPELVEIINKLKDENGKLAGVDASDLLVANSGNDLPVIDLSS 300
           GTKVILAANDMPSINDVTYPELVEIINKLKDENGKLAGVDASDLLVANSGNDLPVIDLSS
Sbjct: 241 GTKVILAANDMPSINDVTYPELVEIINKLKDENGKLAGVDASDLLVANSGNDLPVIDLSS 300

Query: 301 VSPELAYLANDADLVVLEGMGRAIETNLYAQMKCDSIKIGMVKHPEVAQFLGGRLYDCVF 360
           VSPELAYLANDADLVVLEGMGRAIETNLYAQMKCDSIKIGMVKHPEVAQFLGGRLYDCVF
Sbjct: 301 VSPELAYLANDADLVVLEGMGRAIETNLYAQMKCDSIKIGMVKHPEVAQFLGGRLYDCVF 360

Query: 361 KFNEA 365
           KFNEA
Sbjct: 361 KFNEA 365



>Os09g0533100 Similar to Pantothenate kinase 4 (Fragment)
          Length = 755

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 186/349 (53%), Gaps = 35/349 (10%)

Query: 45  WIDLFLNSVPSFRQRA-ENDPTVPDAPAKAEKFAQRYTAMLEELKKNPESNG--GPPDCI 101
           W  +  + +P    +A  ++    DA  + + FA  ++A L  L + P + G  G  + +
Sbjct: 407 WFKILSDHLPDLVDKAVASEGGTDDAKRRGDAFAHAFSAHLARLMEEPAAYGKFGLANLL 466

Query: 102 XXXXXXXXXXXXXGFRDIFKKVKDEENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILA 161
                         F D +  +K  EN  ++++   ++   D + ++  R   LI G+LA
Sbjct: 467 ELREECLREFQ---FVDAYVSIKQRENEASLAVLPDLLMELDSMNEEA-RLLALIEGVLA 522

Query: 162 GNIFDLGSAQLAEVFAKDGM-SFLASCQNLVSRPWVIDDLDAFQNKW----TKKSWEKAV 216
            NIFD GS    +++ K  +       +  + RPW IDD D F+ +       + +++A+
Sbjct: 523 ANIFDWGSRACVDLYHKGTIIEIYRMSRKKMQRPWRIDDFDMFKKRMLADKKGQPYKRAL 582

Query: 217 IFVDNSGADIILGILPFARELLRHGTKVILAANDMPSINDVTYPELVEIINKLKDENGKL 276
           +FVDNSGAD++LG++P ARELLR+GT+V+L AN +P++NDVT  EL  I+ +     G L
Sbjct: 583 LFVDNSGADVVLGMIPLARELLRNGTEVVLVANSLPALNDVTANELPGIVAEAAKHCGIL 642

Query: 277 --------------AGV--DASD------LLVANSGNDLPVIDLSSVSPELAYLANDADL 314
                         AG+  D  D      L+V  +G   P ID   VS ELA  A DADL
Sbjct: 643 RKAAEAGGLIFDAMAGIQDDLKDEPVSVPLMVVENGCGSPCIDFRQVSSELAAAAKDADL 702

Query: 315 VVLEGMGRAIETNLYAQMKCDSIKIGMVKHPEVAQ-FLGGRLYDCVFKF 362
           ++LEGMGR++ TNL A+ KCD++K+ MVK+  +A+    G +YDC+ KF
Sbjct: 703 LILEGMGRSLHTNLNARFKCDTLKLAMVKNQRLAEKLFNGNIYDCICKF 751



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,548,940
Number of extensions: 525238
Number of successful extensions: 1411
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1407
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 263
Effective length of database: 11,709,973
Effective search space: 3079722899
Effective search space used: 3079722899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)