Os06g0325500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF89 family protein.
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Os06g0325500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF89 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.05 | 0.345 | 7.98 | 0.633 | 0.829 | -1.08 | 0.587 | 0.303 | 0.0786 | 13.2 | 20.48 | 942 | -- | -- |
| 54.1 | 0.343 | 7.97 | 0.674 | 0.82 | -1.17 | 0.56 | -- | 0.087 | 13.2 | 19.99 | 966 | -- | -- |
| 55.32 | 0.346 | 7.98 | 0.625 | 0.827 | -0.989 | -- | 0.724 | 0.0758 | 13.2 | 20.58 | 927 | -- | -- |
| 55.61 | 0.347 | 7.97 | 0.685 | 0.826 | -1.35 | -- | -- | 0.103 | 13.2 | 19.28 | 978 | -- | -- |
| 91.74 | 0.449 | 7.98 | 0.734 | -- | -1.21 | -- | -0.22 | 0.1 | -- | 20.58 | 927 | -- | -- |
| 64.92 | 0.378 | 7.95 | 0.912 | 0.751 | -- | 0.741 | -- | 0.193 | 13.3 | -- | -- | -- | -- |
| 67.17 | 0.384 | 7.95 | 0.938 | 0.75 | -- | -- | -- | 0.197 | 13.3 | -- | -- | -- | -- |
| 91.77 | 0.448 | 7.98 | 0.726 | -- | -1.15 | -- | -- | 0.0993 | -- | 20.58 | 927 | -- | -- |
| 63.83 | 0.372 | 8 | -- | 0.807 | -1.41 | -- | -- | -0.0331 | 13.3 | 19.33 | 2435 | -- | -- |
| 101.89 | 0.472 | 7.96 | 0.909 | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
| 90.37 | 0.445 | 7.97 | -- | 0.734 | -- | -- | -- | 0.0927 | 13.3 | -- | -- | -- | -- |
| 99.04 | 0.463 | 8.01 | -- | -- | -1.42 | -- | -- | -0.0415 | -- | 19.21 | 7499 | -- | -- |
| 123.68 | 0.519 | 7.98 | -- | -- | -- | -- | -- | 0.0808 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.50 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 2 | 50.91 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 4 | 51.00 | temperature | 15.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 6 | 51.13 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 11 | 51.62 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 14 | 51.81 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 16 | 51.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 34 | 52.20 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 22 |
| 36 | 52.35 | humidity | 80.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 38 | 52.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 41 | 52.43 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 46 | 52.49 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 49 | 52.53 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 66 | 52.74 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 69 | 52.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 78 | 52.93 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 86 | 53.05 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 23 |
| 111 | 53.26 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 117 | 53.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 119 | 53.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 122 | 53.38 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 178 | 53.75 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 14 |
| 200 | 53.85 | temperature | 20.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 214 | 53.89 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 10 |
| 222 | 53.91 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 236 | 53.97 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 237 | 53.97 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 249 | 54.03 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 277 | 54.11 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 292 | 54.15 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 12 |
| 318 | 54.24 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 319 | 54.24 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 325 | 54.27 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 23 |
| 327 | 54.27 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 10 | 4 |
| 343 | 54.30 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 10 |
| 374 | 54.37 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 375 | 54.37 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 7 |
| 378 | 54.38 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 399 | 54.41 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 400 | 54.41 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 401 | 54.41 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 403 | 54.42 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 406 | 54.42 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 21 | NA |
| 420 | 54.44 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 3 |
| 428 | 54.45 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 437 | 54.46 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 460 | 54.48 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 507 | 54.54 | temperature | 20.0 | 720 | < th | dose dependent | no | NA | NA |
| 533 | 54.58 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 590 | 54.66 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 603 | 54.69 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 613 | 54.70 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 689 | 54.83 | temperature | 15.0 | 720 | > th | dose independent | rect. | 12 | 12 |
| 713 | 54.86 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 765 | 54.94 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 766 | 54.94 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 767 | 54.94 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 772 | 54.94 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 804 | 54.97 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 810 | 54.98 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 830 | 55.00 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 860 | 55.03 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 879 | 55.06 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 880 | 55.06 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 937 | 55.12 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 3 |
| 944 | 55.13 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 947 | 55.13 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 972 | 55.16 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 978 | 55.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |