BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0325500 Os06g0325500|AK063974
(365 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35360.1 | chr4:16812303-16814656 REVERSE LENGTH=368 576 e-165
AT2G17340.1 | chr2:7541615-7544089 REVERSE LENGTH=368 564 e-161
AT2G17320.1 | chr2:7533537-7535876 REVERSE LENGTH=362 544 e-155
AT4G32180.1 | chr4:15537724-15543715 REVERSE LENGTH=902 179 3e-45
>AT4G35360.1 | chr4:16812303-16814656 REVERSE LENGTH=368
Length = 367
Score = 576 bits (1485), Expect = e-165, Method: Compositional matrix adjust.
Identities = 276/365 (75%), Positives = 312/365 (85%)
Query: 1 MESSSPSVPFPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRA 60
MES S V PLL P+ES YRACTIPYRF SDNPRKATP EI WIDLF NS+PSF++RA
Sbjct: 1 MESDSEMVALPLLPTPIESNYRACTIPYRFPSDNPRKATPTEISWIDLFSNSIPSFKERA 60
Query: 61 ENDPTVPDAPAKAEKFAQRYTAMLEELKKNPESNGGPPDCIXXXXXXXXXXXXXGFRDIF 120
E+D TVPDAP +AEKFA+RY +LE+LKK+PES+GGPPDCI GFRDIF
Sbjct: 61 ESDTTVPDAPVRAEKFAKRYAEILEDLKKDPESHGGPPDCILLCRIRELILRELGFRDIF 120
Query: 121 KKVKDEENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEVFAKDG 180
KKVKDEENAKA+SLF VV+ +D I D+GKR ENL+RGI AGNIFDLGSAQLAEVF+KDG
Sbjct: 121 KKVKDEENAKAISLFPEVVRLSDAINDEGKRIENLVRGIFAGNIFDLGSAQLAEVFSKDG 180
Query: 181 MSFLASCQNLVSRPWVIDDLDAFQNKWTKKSWEKAVIFVDNSGADIILGILPFARELLRH 240
MSFLASCQNLVSRPWVIDDLD FQ +W KK W+KAVIFVDNSGADIILGILPFARE+LR
Sbjct: 181 MSFLASCQNLVSRPWVIDDLDNFQARWLKKPWKKAVIFVDNSGADIILGILPFAREMLRL 240
Query: 241 GTKVILAANDMPSINDVTYPELVEIINKLKDENGKLAGVDASDLLVANSGNDLPVIDLSS 300
G +V+LAAN++PSINDVTY EL EI++KL DENG+L GVD S+LL+ANSGNDLPVIDL+
Sbjct: 241 GMQVVLAANELPSINDVTYIELAEILSKLNDENGQLMGVDTSNLLIANSGNDLPVIDLAR 300
Query: 301 VSPELAYLANDADLVVLEGMGRAIETNLYAQMKCDSIKIGMVKHPEVAQFLGGRLYDCVF 360
VS E+AYL++DADLV+LEGMGR IETNLYAQ KCDS+KIGMVKHPEVAQFLGGRLYDCV
Sbjct: 301 VSQEVAYLSSDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVI 360
Query: 361 KFNEA 365
K+NE
Sbjct: 361 KYNEV 365
>AT2G17340.1 | chr2:7541615-7544089 REVERSE LENGTH=368
Length = 367
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 272/364 (74%), Positives = 311/364 (85%)
Query: 1 MESSSPSVPFPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRA 60
MES S VPFP L P+E+ YRACTIPYRF SD+P+KATP EI WI++F NS+PSF++RA
Sbjct: 1 MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRA 60
Query: 61 ENDPTVPDAPAKAEKFAQRYTAMLEELKKNPESNGGPPDCIXXXXXXXXXXXXXGFRDIF 120
E+D TVPDAPA+AEKFA+RY +LE+LKK+PES+GGPPD I GFRDIF
Sbjct: 61 ESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIF 120
Query: 121 KKVKDEENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEVFAKDG 180
KKVKDEENAKA+SLF VV +D IEDDGKR ENL+RGI AGNIFDLGSAQLAEVF++DG
Sbjct: 121 KKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDG 180
Query: 181 MSFLASCQNLVSRPWVIDDLDAFQNKWTKKSWEKAVIFVDNSGADIILGILPFARELLRH 240
MSFLASCQNLV RPWVIDDL+ FQ KW KSW+KAVIFVDNSGADIILGILPFARELLR
Sbjct: 181 MSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRR 240
Query: 241 GTKVILAANDMPSINDVTYPELVEIINKLKDENGKLAGVDASDLLVANSGNDLPVIDLSS 300
G +V+LAAN++PSIND+T EL EI+++LKDENG+L GVD S LL+ANSGNDLPVIDLS
Sbjct: 241 GAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSR 300
Query: 301 VSPELAYLANDADLVVLEGMGRAIETNLYAQMKCDSIKIGMVKHPEVAQFLGGRLYDCVF 360
VS ELAYL++DADLV++EGMGR IETNLYAQ KCDS+KIGMVKH EVA+FLGGRLYDCVF
Sbjct: 301 VSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVF 360
Query: 361 KFNE 364
KFNE
Sbjct: 361 KFNE 364
>AT2G17320.1 | chr2:7533537-7535876 REVERSE LENGTH=362
Length = 361
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/357 (72%), Positives = 300/357 (84%)
Query: 8 VPFPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRAENDPTVP 67
+PFPLL P+E+ YRACTIPYRF SDN +KATP EI WI++F NS+PSF++RAE+D +VP
Sbjct: 2 IPFPLLPTPIETNYRACTIPYRFPSDNLKKATPTEISWINVFANSIPSFKKRAESDTSVP 61
Query: 68 DAPAKAEKFAQRYTAMLEELKKNPESNGGPPDCIXXXXXXXXXXXXXGFRDIFKKVKDEE 127
DAPA+A+ F QRY LE KK+PESNGGPPD + GFRDIFKKVKDEE
Sbjct: 62 DAPARAKIFEQRYAGFLEGWKKDPESNGGPPDGVILGRVREHLLRELGFRDIFKKVKDEE 121
Query: 128 NAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEVFAKDGMSFLASC 187
NAKA+SLF VV +D IEDDG+R ENL+RGI AGNIFDLGSAQLAEVF++DG+SFLA+
Sbjct: 122 NAKAISLFPEVVSLSDAIEDDGERLENLVRGIFAGNIFDLGSAQLAEVFSRDGISFLATS 181
Query: 188 QNLVSRPWVIDDLDAFQNKWTKKSWEKAVIFVDNSGADIILGILPFARELLRHGTKVILA 247
QNLV RPWVIDDL+ FQ KW KK W+KAVIFVDNSGADIILGILPFARELLR G +V+LA
Sbjct: 182 QNLVPRPWVIDDLNKFQAKWVKKPWKKAVIFVDNSGADIILGILPFARELLRRGIQVVLA 241
Query: 248 ANDMPSINDVTYPELVEIINKLKDENGKLAGVDASDLLVANSGNDLPVIDLSSVSPELAY 307
AN++P+INDVTY EL +I+++LKD NG+L GVD S LL+ANSGNDL VIDLS VS ELAY
Sbjct: 242 ANELPAINDVTYTELTDIVSQLKDGNGQLIGVDTSKLLIANSGNDLAVIDLSRVSHELAY 301
Query: 308 LANDADLVVLEGMGRAIETNLYAQMKCDSIKIGMVKHPEVAQFLGGRLYDCVFKFNE 364
L++DADLV+LEGMGR IETNLYAQ KCDS+KIGMVKH EVAQFLGGRLYDCVFKFNE
Sbjct: 302 LSSDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHVEVAQFLGGRLYDCVFKFNE 358
>AT4G32180.1 | chr4:15537724-15543715 REVERSE LENGTH=902
Length = 901
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 47/386 (12%)
Query: 10 FPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRA-ENDPTVPD 68
FPLL P TY TI SD + W+ + +P A ++ D
Sbjct: 525 FPLLADP--KTYEPNTIDL---SDQGERE-----YWLKVLSEHLPDLVDTAVASEGGTED 574
Query: 69 APAKAEKFAQRYTAMLEELKKNPESNG--GPPDCIXXXXXXXXXXXXXGFRDIFKKVKDE 126
A + + FA+ ++A L L + P + G G + + F D ++ +K
Sbjct: 575 AKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLLELREECLREFQ---FVDAYRSIKQR 631
Query: 127 ENAKAMSLFEGVVQRNDEIEDDGKRAENLIRGILAGNIFDLGSAQLAEVFAKDGM-SFLA 185
EN ++++ +++ D + ++ R LI G+LA NIFD GS +++ K +
Sbjct: 632 ENEASLAVLPDLLEELDSMSEEA-RLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYR 690
Query: 186 SCQNLVSRPWVIDDLDAFQNKWTKKS------WEKAVIFVDNSGADIILGILPFARELLR 239
+N + RPW +DD DAF+ + ++A++FVDNSGAD+ILG+LP ARE LR
Sbjct: 691 MSRNKMQRPWRVDDFDAFKERMLGSGGKQPHRHKRALLFVDNSGADVILGMLPLAREFLR 750
Query: 240 HGTKVILAANDMPSINDVTYPEL----------VEIINKLKDENGKL--AGVDASD---- 283
GT+V+L AN +P++NDVT EL +I+ + + G L A V+ D
Sbjct: 751 RGTEVVLVANSLPALNDVTAMELPDIVAGAAKHCDILRRAAEMGGLLVDAMVNPGDGSKK 810
Query: 284 ------LLVANSGNDLPVIDLSSVSPELAYLANDADLVVLEGMGRAIETNLYAQMKCDSI 337
L+V +G P IDL VS ELA A DADLVVLEGMGRA+ TN AQ +C+++
Sbjct: 811 DSTSAPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVVLEGMGRALHTNFNAQFQCEAL 870
Query: 338 KIGMVKHPEVAQ-FLGGRLYDCVFKF 362
K+ MVK+ +A+ + G +YDCV ++
Sbjct: 871 KLAMVKNQRLAEKLIKGNIYDCVCRY 896
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,114,375
Number of extensions: 344063
Number of successful extensions: 895
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 892
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,364,969
Effective search space: 2216716785
Effective search space used: 2216716785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)