BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0318300 Os06g0318300|AK065671
         (270 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0318300  Similar to Rho GDP-dissociation inhibitor 1 (R...   347   4e-96
Os02g0719000  Similar to Rho GDP-dissociation inhibitor 1 (R...   283   1e-76
Os01g0913600  Similar to Rho GDP-dissociation inhibitor 1 (R...   226   1e-59

>Os06g0318300 Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)
          Length = 270

 Score =  347 bits (891), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 183/247 (74%), Positives = 183/247 (74%)

Query: 24  NDDEKPPPSXXXXXXXXXXXXXXXXXXXXXXXTEGSSRXXXXXXXXXXXXXXXXXXXXXX 83
           NDDEKPPPS                       TEGSSR                      
Sbjct: 24  NDDEKPPPSLEGKELRRVEEEEPAAAARPEKLTEGSSRAAEAEEEEEVVEDEEDDDEEDE 83

Query: 84  XXXXXXIDLGPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCIL 143
                 IDLGPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCIL
Sbjct: 84  GKVAEAIDLGPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCIL 143

Query: 144 SPGRPDVLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRV 203
           SPGRPDVLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRV
Sbjct: 144 SPGRPDVLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRV 203

Query: 204 DKTKEMLGTFSPQLXXXXXXXXXXXXXSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIR 263
           DKTKEMLGTFSPQL             SGVFARGSYSAKTKFVDDDRKCYLEINYTFDIR
Sbjct: 204 DKTKEMLGTFSPQLEPYTYVTPEETTPSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIR 263

Query: 264 RDWPCKS 270
           RDWPCKS
Sbjct: 264 RDWPCKS 270



>Os02g0719000 Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)
          Length = 377

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/181 (77%), Positives = 153/181 (84%), Gaps = 1/181 (0%)

Query: 90  IDLGPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCILSPGRPD 149
           IDLGPRVSIK+QLE DK+DESLRRWKEQLLGSVDLNSVGE+LEPDV+I SL ILSPGRPD
Sbjct: 198 IDLGPRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPDVKIMSLAILSPGRPD 257

Query: 150 VLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEM 209
           + LPLPVEP N+K  WFTLKEGS Y+LKFTFSVS+NIVSGLRYTN VWK GI+VD  KEM
Sbjct: 258 IFLPLPVEP-NAKGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEM 316

Query: 210 LGTFSPQLXXXXXXXXXXXXXSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRRDWPCK 269
           LGTFSPQ              SG+FARGSYSA+TKF+DDDRKCYLEINYTFDIRR+WP  
Sbjct: 317 LGTFSPQPEPYTYVTPEETTPSGMFARGSYSARTKFLDDDRKCYLEINYTFDIRREWPAL 376

Query: 270 S 270
           S
Sbjct: 377 S 377



>Os01g0913600 Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)
          Length = 217

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 136/177 (76%), Gaps = 1/177 (0%)

Query: 92  LGPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCILSPGRPDVL 151
           LGP+V +KEQLE+DK+DESLRRWKEQLLG VD   +GE+ EP+V++ +L ILSP RPD++
Sbjct: 40  LGPQVPLKEQLELDKDDESLRRWKEQLLGQVDTEQLGETAEPEVKVLNLTILSPDRPDLV 99

Query: 152 LPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEMLG 211
           LP+P  P + K   F LK+GSTY  +F+F VS+NIVSGL+YTNTVWK G+RV+  K MLG
Sbjct: 100 LPIPFVP-DEKGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVMLG 158

Query: 212 TFSPQLXXXXXXXXXXXXXSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRRDWPC 268
           TFSPQL             +G+FARGSYSAK KFVDDD KCYLE++Y F+IR++WP 
Sbjct: 159 TFSPQLEPYTYEGEEETTPAGMFARGSYSAKLKFVDDDGKCYLEMSYYFEIRKEWPT 215



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,699,071
Number of extensions: 223847
Number of successful extensions: 326
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)