BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0309000 Os06g0309000|AK121021
         (662 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0309000  Zinc finger, FYVE/PHD-type domain containing p...  1206   0.0  
Os12g0256600  Hypothetical protein                                 77   3e-14

>Os06g0309000 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 662

 Score = 1206 bits (3120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/597 (97%), Positives = 582/597 (97%)

Query: 66  FPREAVRALVEDLGLARGRDPSAMGYRPRRASIAERILLTKRKMEEIKEAPVYPTTNVSQ 125
           FPREAVRALVEDLGLARGRDPSAMGYRPRRASIAERILLTKRKMEEIKEAPVYPTTNVSQ
Sbjct: 66  FPREAVRALVEDLGLARGRDPSAMGYRPRRASIAERILLTKRKMEEIKEAPVYPTTNVSQ 125

Query: 126 TTATRATTVFQHGASKPTTGLPMNISAVASFPVTTPPTIPSPNILKQTQLNESPSGVKAA 185
           TTATRATTVFQHGASKPTTGLPMNISAVASFPVTTPPTIPSPNILKQTQLNESPSGVKAA
Sbjct: 126 TTATRATTVFQHGASKPTTGLPMNISAVASFPVTTPPTIPSPNILKQTQLNESPSGVKAA 185

Query: 186 GTSSIVSVPSVGPTNIKVEKGVNSPTCTQNGATIGQANKSAHLTATMSNPNIVPSSSHEG 245
           GTSSIVSVPSVGPTNIKVEKGVNSPTCTQNGATIGQANKSAHLTATMSNPNIVPSSSHEG
Sbjct: 186 GTSSIVSVPSVGPTNIKVEKGVNSPTCTQNGATIGQANKSAHLTATMSNPNIVPSSSHEG 245

Query: 246 TPQHEKAPVIRPITVKNGMTHQSRPGVSFIQRQSTFPNHSAIAKTVQQVLHQPVNHPNWI 305
           TPQHEKAPVIRPITVKNGMTHQSRPGVSFIQRQSTFPNHSAIAKTVQQVLHQPVNHPNWI
Sbjct: 246 TPQHEKAPVIRPITVKNGMTHQSRPGVSFIQRQSTFPNHSAIAKTVQQVLHQPVNHPNWI 305

Query: 306 PPSTEYMRSGLGCQVCKVFIIDIHSMIICDACERGIHLKCLQHDGVNVLPPKAEWYCPTC 365
           PPSTEYMRSGLGCQVCKVFIIDIHSMIICDACERGIHLKCLQHDGVNVLPPKAEWYCPTC
Sbjct: 306 PPSTEYMRSGLGCQVCKVFIIDIHSMIICDACERGIHLKCLQHDGVNVLPPKAEWYCPTC 365

Query: 366 VARSKGKPLPPKYGKVTRTVVAPKVNLISGVPSQGVSENRTTKDNNQELAADGTVIDKNS 425
           VARSKGKPLPPKYGKVTRTVVAPKVNLISGVPSQGVSENRTTKDNNQELAADGTVIDKNS
Sbjct: 366 VARSKGKPLPPKYGKVTRTVVAPKVNLISGVPSQGVSENRTTKDNNQELAADGTVIDKNS 425

Query: 426 SEANRIVHNSDKLALXXXXXXXXXXXXXXXVDKGRGKPQGVGTMENNAISERGNVHELTS 485
           SEANRIVHNSDKLAL               VDKGRGKPQGVGTMENNAISERGNVHELTS
Sbjct: 426 SEANRIVHNSDKLALESSKEQSQSGSASAAVDKGRGKPQGVGTMENNAISERGNVHELTS 485

Query: 486 NGDLSTKNEIVIGDAKDKTIVCSTDHSIVGWVGDPLRVVENKTYYYSCNIDGIAYNLDDH 545
           NGDLSTKNEIVIGDAKDKTIVCSTDHSIVGWVGDPLRVVENKTYYYSCNIDGIAYNLDDH
Sbjct: 486 NGDLSTKNEIVIGDAKDKTIVCSTDHSIVGWVGDPLRVVENKTYYYSCNIDGIAYNLDDH 545

Query: 546 ILVASKDKESAPSKLQSLWEEHDSRSKMALVSPYFFASDIPELISKPCTAEENEVFASCN 605
           ILVASKDKESAPSKLQSLWEEHDSRSKMALVSPYFFASDIPELISKPCTAEENEVFASCN
Sbjct: 546 ILVASKDKESAPSKLQSLWEEHDSRSKMALVSPYFFASDIPELISKPCTAEENEVFASCN 605

Query: 606 QRTVTVSAICGQCEVLHVDKFREETKGSQVVSSRLHPIFLCRWKYDESTSSFSSVNN 662
           QRTVTVSAICGQCEVLHVDKFREETKGSQVVSSRLHPIFLCRWKYDESTSSFSSVNN
Sbjct: 606 QRTVTVSAICGQCEVLHVDKFREETKGSQVVSSRLHPIFLCRWKYDESTSSFSSVNN 662



>Os12g0256600 Hypothetical protein
          Length = 42

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/38 (86%), Positives = 36/38 (94%)

Query: 599 EVFASCNQRTVTVSAICGQCEVLHVDKFREETKGSQVV 636
           +VFASCNQRTVTVS ICG CEVLHVDKFREETKGSQ++
Sbjct: 4   QVFASCNQRTVTVSVICGSCEVLHVDKFREETKGSQLI 41



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,665,632
Number of extensions: 886498
Number of successful extensions: 2352
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2354
Number of HSP's successfully gapped: 2
Length of query: 662
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 555
Effective length of database: 11,448,903
Effective search space: 6354141165
Effective search space used: 6354141165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)