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Os06g0309000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.46 (0.0213) R2 : 0.705
β1 : 1.7 (0.0795) R2dD : 0.332 R2D : 0.163
β2 : 1.27 (0.0562) R2dC : 0.353 R2C : 0.18
β3 : 2 (0.0936) R2dE : 0.386 R2E : 0.0477
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.246 (0.049) R2dN8 : 0.0264 R2N8 : -0.0793
σ : 0.391
deviance : 70.34
__
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C
peak time of C : 17.7
E
wheather : temperature
threshold : 26.3
memory length : 18
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.19 0.388 9.44 1.87 1.26 1.94 -0.415 -1.1 0.285 17.7 26.35 15 -- --
70.34 0.394 9.46 1.68 1.26 1.98 -0.225 -- 0.237 17.7 26.3 18 -- --
68.57 0.386 9.44 1.87 1.27 1.95 -- -1.05 0.287 17.7 26.56 14 -- --
70.34 0.391 9.46 1.7 1.27 2 -- -- 0.246 17.7 26.3 18 -- --
132.04 0.538 9.46 1.72 -- 1.84 -- -0.751 0.107 -- 24 14 -- --
129.18 0.533 9.56 1.22 1.08 -- -0.206 -- -0.194 19.3 -- -- -- --
129.29 0.532 9.56 1.22 1.08 -- -- -- -0.195 19.3 -- -- -- --
132.9 0.539 9.47 1.62 -- 1.92 -- -- 0.0842 -- 23.92 5 -- --
138.61 0.551 9.53 -- 1.16 1.35 -- -- -0.0718 18.2 26.3 18 -- --
190.82 0.645 9.54 1.2 -- -- -- -- -0.213 -- -- -- -- --
168.6 0.607 9.6 -- 1.07 -- -- -- -0.331 19.3 -- -- -- --
196.85 0.653 9.53 -- -- 1.4 -- -- -0.173 -- 23.7 2 -- --
228.96 0.706 9.57 -- -- -- -- -- -0.347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.63 temperature 25 10 < th dose dependent rect. 23 23
2 68.67 temperature 25 10 < th dose dependent rect. 5 23
3 68.83 temperature 25 10 < th dose dependent rect. 19 23
5 68.85 temperature 25 10 < th dose dependent rect. 1 23
6 68.94 temperature 25 10 < th dose dependent no NA NA
7 68.96 temperature 25 10 < th dose dependent rect. 15 23
8 68.97 temperature 25 10 < th dose dependent rect. 11 23
9 68.99 temperature 25 10 < th dose dependent rect. 17 23
10 69.03 temperature 25 10 < th dose dependent rect. 9 23
11 69.03 temperature 25 10 < th dose dependent rect. 21 23
21 69.45 temperature 25 30 < th dose dependent rect. 7 23
22 69.46 temperature 25 30 < th dose dependent rect. 13 23
25 69.61 temperature 25 10 < th dose dependent rect. 3 23
224 77.27 temperature 15 720 > th dose dependent rect. 10 22
230 77.37 temperature 15 720 > th dose dependent rect. 14 18
240 77.53 temperature 10 270 > th dose dependent rect. 12 23
259 77.84 temperature 10 720 > th dose dependent rect. 3 23
324 78.59 temperature 10 720 > th dose dependent no NA NA
328 78.64 temperature 10 720 > th dose dependent rect. 6 23
331 78.66 temperature 10 720 > th dose dependent rect. 1 23
337 78.71 temperature 15 720 > th dose dependent rect. 17 23
380 78.94 temperature 10 720 > th dose dependent rect. 19 23
447 79.41 temperature 10 1440 > th dose dependent rect. 6 8
479 79.59 temperature 15 720 > th dose dependent sin 14 NA
502 79.74 temperature 10 1440 > th dose dependent sin 2 NA
509 79.78 temperature 10 1440 > th dose dependent rect. 5 18
556 79.88 temperature 15 720 > th dose dependent rect. 23 23
641 80.06 wind 9 43200 > th dose dependent rect. 17 7
708 80.18 wind 9 43200 > th dose dependent rect. 17 11
734 80.23 temperature 10 1440 > th dose dependent rect. 11 1
755 80.25 temperature 15 90 > th dose dependent rect. 3 23
825 80.36 temperature 10 10 > th dose dependent no NA NA