BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0309000 Os06g0309000|AK121021
(662 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50620.1 | chr1:18748537-18751005 FORWARD LENGTH=630 140 2e-33
AT3G20280.1 | chr3:7071475-7074340 FORWARD LENGTH=744 132 6e-31
AT4G12620.1 | chr4:7459812-7462253 REVERSE LENGTH=814 51 2e-06
>AT1G50620.1 | chr1:18748537-18751005 FORWARD LENGTH=630
Length = 629
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 159/346 (45%), Gaps = 66/346 (19%)
Query: 69 EAVRALVEDLGLARGRDPSAMGYRPRRASIAERILLTKRKMEEIKEAPVYPTTNVSQTTA 128
+A+ A++EDLG +G+R + +I+E++ L KRKMEE+K+ PV TT+ S
Sbjct: 94 DAIGAVIEDLGFNGKLKDQRLGFRAPKLTISEKLSLGKRKMEELKKNPVVSTTSTSPAVN 153
Query: 129 TRATTVFQHGASKPTTGLPMNISAVASFPVTTPPTIPSPNILKQTQLNESPSGVKAAGTS 188
N+S +P +++ S S V A+G+
Sbjct: 154 --------------------NVSMAHQWP--------------NSEMKASASSVNASGSH 179
Query: 189 SIVSVPSVGPTNIKVEK---GVNSPTCTQNGATIGQANKSAHLTATMSNPNIVPSSSHEG 245
+ + G T ++E+ + T T G + N + T + P+ S+ G
Sbjct: 180 YVRE--ASGITQARMERPQFKSDLHTGTSQGPAVPAGNYFGNTTTWSAQPHSSTSTISFG 237
Query: 246 TPQHEKAPV----------IRPITVKN------GMTHQSRPGVSFIQRQSTFPN--HSAI 287
T K PV RP + GM G ++ Q S F N H+ I
Sbjct: 238 TASDSKVPVPSSSRISDPSFRPFMSQTPPGAFPGMK-----GATYGQTSSPFGNNNHAEI 292
Query: 288 AKTVQQVLHQPVNHPN--WIPPSTEYMRSGLGCQVCKVFIIDIHSMIICDACERGIHLKC 345
AK + +VL QP N W PPS EYM + CQ+C+ I +I +++ICDACE+G HLKC
Sbjct: 293 AKLIHKVL-QPRAKQNLLWNPPSREYMSKAMTCQICQGTINEIETVLICDACEKGYHLKC 351
Query: 346 LQHDGVNVLPPKAEWYCPTCVARSKGKPLPPKYGKVTRTVVAPKVN 391
L + + PK+EW+C CV GK PPKYG+V R+ K++
Sbjct: 352 LHAHNIKGV-PKSEWHCSRCVQLYNGKSFPPKYGRVMRSATTAKMS 396
>AT3G20280.1 | chr3:7071475-7074340 FORWARD LENGTH=744
Length = 743
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 152/323 (47%), Gaps = 55/323 (17%)
Query: 68 REAVRALVEDLGLARGRDPSAMGYRPRRASIAERILLTKRKMEEIKEAPVYPTTNVSQTT 127
++ V++++EDLG +G+R +I+E++ L KRKMEE ++ YPTT+ T
Sbjct: 91 KDDVKSVIEDLGFNGKLKDQRLGFRAPTVTISEKLSLGKRKMEEAEK---YPTTS---TV 144
Query: 128 ATRATTVFQHGASKPTTGLPMNISAVASFPVTTPPTIPSPNILKQTQLNESPSGVKAAGT 187
+T T +G+ GL S +P
Sbjct: 145 STGYTLSQPNGSLASPGGLANKASVAHQWP------------------------------ 174
Query: 188 SSIVSVPSVGPTNIKVEKGVNSPTCTQNGATIGQANKSAHLTATMSNPNIVPSSSHEGTP 247
SS V+ + ++ K+++ P NGA+ G SA+ A + + PS+ T
Sbjct: 175 SSEVATANTSGSHFKLDR----PQMVLNGASQGTPVSSANYYAEPWSAQL-PSTISFSTA 229
Query: 248 QHEKAPV----------IRPITVKNGMTHQSRPGVSFIQRQSTFPNHSAIAKTVQQVLHQ 297
+K P+ RP ++G + + + Q S NH+ IAK + + L
Sbjct: 230 PDKKVPIQSSVRTADPSFRPF--RHGTFTGTNQPMHYSQTSSFGGNHTEIAKIIHKFLQP 287
Query: 298 PV-NHPNWIPPSTEYMRSGLGCQVCKVFIIDIHSMIICDACERGIHLKCLQHDGVNVLPP 356
V +P W PPS EYM + CQ+C+V I ++ +++ICDACE+ HLKCLQ + + + P
Sbjct: 288 RVKQYPLWNPPSREYMSRAMACQICEVTINEMDTLLICDACEKAYHLKCLQGNNMKGV-P 346
Query: 357 KAEWYCPTCVARSKGKPLPPKYG 379
K+EW+C CV GKP PP YG
Sbjct: 347 KSEWHCSRCVQAFNGKPFPPTYG 369
>AT4G12620.1 | chr4:7459812-7462253 REVERSE LENGTH=814
Length = 813
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 318 CQVCKVFIIDIHSMIICDACERGIHLKCLQHDGVNVLPPKAEWYCPTCVARSKGK----- 372
CQ+C F D + MI CD C G HLKCL+ V P+ +W C C + G+
Sbjct: 169 CQIC--FKSDTNIMIECDDCLGGFHLKCLKPPLKEV--PEGDWICQFCEVKKSGQSQTLD 224
Query: 373 -PLPPKYGKVTRTVVAPKVNLISG 395
P PP+ K+ RT+ + L+SG
Sbjct: 225 LPKPPEGKKLARTM---REKLLSG 245
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,205,757
Number of extensions: 573246
Number of successful extensions: 1651
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1660
Number of HSP's successfully gapped: 3
Length of query: 662
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 557
Effective length of database: 8,227,889
Effective search space: 4582934173
Effective search space used: 4582934173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)