BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0304600 Os06g0304600|AK060352
         (152 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0304600  Peptidase A1, pepsin family protein                 196   7e-51
Os02g0720900  Peptidase A1, pepsin family protein                 108   1e-24

>Os06g0304600 Peptidase A1, pepsin family protein
          Length = 152

 Score =  196 bits (497), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 106/152 (69%)

Query: 1   AGGSKWRCXXXXXXXXXXXXXXXXXXETSPTFVPHRSVVSSPCSPAPLPSDLPFSAVVTH 60
           AGGSKWRC                  ETSPTFVPHRSVVSSPCSPAPLPSDLPFSAVVTH
Sbjct: 1   AGGSKWRCFFPFSLPALSSSPLQPLSETSPTFVPHRSVVSSPCSPAPLPSDLPFSAVVTH 60

Query: 61  DDARIAHLASRLAXXXXXXXXXXXXXXGHRKKKXXXXXXXXXXXXXXPLTPGASVAVGNY 120
           DDARIAHLASRLA              GHRKKK              PLTPGASVAVGNY
Sbjct: 61  DDARIAHLASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNY 120

Query: 121 VTRLGLGTPATSYVMVVDTGSSLTCFAAGGCS 152
           VTRLGLGTPATSYVMVVDTGSSLTCFAAGGCS
Sbjct: 121 VTRLGLGTPATSYVMVVDTGSSLTCFAAGGCS 152



>Os02g0720900 Peptidase A1, pepsin family protein
          Length = 458

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 68/111 (61%), Gaps = 9/111 (8%)

Query: 41  SPCSPAPLPSDLPFSAVVTHDDARIAHLASRLAXXXXXXXXXXXXXXGHRKKKXXXXXXX 100
           SPCSPAP+P+DLPF+AV+THDDARI+ LA+RLA                           
Sbjct: 52  SPCSPAPVPADLPFTAVLTHDDARISSLAARLAKTPSARATSL---------DADADAGL 102

Query: 101 XXXXXXXPLTPGASVAVGNYVTRLGLGTPATSYVMVVDTGSSLTCFAAGGC 151
                  PL+PGASV VGNYVTR+GLGTPAT YVMVVDTGSSLT      C
Sbjct: 103 AGSLASVPLSPGASVGVGNYVTRMGLGTPATQYVMVVDTGSSLTWLQCSPC 153



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,319,615
Number of extensions: 130978
Number of successful extensions: 596
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)