BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0303800 Os06g0303800|AK100772
(137 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0303800 Conserved hypothetical protein 283 2e-77
Os02g0721700 Conserved hypothetical protein 117 2e-27
Os09g0297800 Conserved hypothetical protein 102 6e-23
>Os06g0303800 Conserved hypothetical protein
Length = 137
Score = 283 bits (725), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MGTSMNRRSLLQAKGGCPVSFENQNYTTITSKCKSPWPADLCCPALNEFACNFSQYINDE 60
MGTSMNRRSLLQAKGGCPVSFENQNYTTITSKCKSPWPADLCCPALNEFACNFSQYINDE
Sbjct: 1 MGTSMNRRSLLQAKGGCPVSFENQNYTTITSKCKSPWPADLCCPALNEFACNFSQYINDE 60
Query: 61 STNCAESMWVYLNAHGSYPAGLFSNECAVLDCNGNNSTISTNQTANGSGTRGAKGISEMY 120
STNCAESMWVYLNAHGSYPAGLFSNECAVLDCNGNNSTISTNQTANGSGTRGAKGISEMY
Sbjct: 61 STNCAESMWVYLNAHGSYPAGLFSNECAVLDCNGNNSTISTNQTANGSGTRGAKGISEMY 120
Query: 121 SLVTTLIVSGLPVLLFY 137
SLVTTLIVSGLPVLLFY
Sbjct: 121 SLVTTLIVSGLPVLLFY 137
>Os02g0721700 Conserved hypothetical protein
Length = 167
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 8 RSLLQAKGGCPVSFENQNYTTITSKCKSP-WPADLCCPALNEFACNFSQYINDESTNCAE 66
RSLLQAK CPV+FE QNYT ITSKCK P +PA CC A EFAC F++YINDES +CA
Sbjct: 41 RSLLQAKKNCPVNFEFQNYTIITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCAS 100
Query: 67 SMWVYLNAHGSYPAGLFSNECAV----LDCNGNNSTISTNQTANGSGTRGAKGISEMYSL 122
+M+ Y+N +G YP GLF+NEC L C G + S +A G + S + +
Sbjct: 101 TMFSYINLYGKYPPGLFANECREGKLGLSCEGVSQKDSVVSSA------GQQAQSSLLAF 154
Query: 123 VTTLIVSGLPVLLFY 137
+ ++ GL L F+
Sbjct: 155 I--MLTFGLAALWFH 167
>Os09g0297800 Conserved hypothetical protein
Length = 174
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 10 LLQAKGGCPVSFENQNYTTITSKCKSP-WPADLCCPALNEFACNFSQYINDESTNCAESM 68
LLQAK CPV+FE NYT ITS+CK P +P LCC AL + AC F+ YIND T CA SM
Sbjct: 45 LLQAKKDCPVNFEEANYTVITSRCKGPMYPPALCCQALKDLACPFTAYINDAQTTCAASM 104
Query: 69 WVYLNAHGSYPAGLFSNEC 87
+ Y+N +G YP GLF+N C
Sbjct: 105 FSYINLYGKYPPGLFANTC 123
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,661,513
Number of extensions: 181339
Number of successful extensions: 426
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 3
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)