Os06g0303800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0303800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.13 | 0.367 | 9.8 | 0.236 | 1.07 | -1.12 | -0.595 | -0.163 | -0.0824 | 0.429 | 15.2 | 15 | -- | -- |
| 61.14 | 0.364 | 9.8 | 0.256 | 1.08 | -1.12 | -0.564 | -- | -0.0752 | 0.432 | 15.21 | 18 | -- | -- |
| 62.28 | 0.37 | 9.79 | 0.337 | 1.08 | -1.11 | -- | 0.45 | -0.0608 | 0.441 | 15.2 | 15 | -- | -- |
| 62.45 | 0.368 | 9.8 | 0.279 | 1.08 | -1.11 | -- | -- | -0.0756 | 0.391 | 15.2 | 18 | -- | -- |
| 113.41 | 0.496 | 9.72 | 0.685 | -- | -1.89 | -- | 1.42 | 0.145 | -- | 21 | 2 | -- | -- |
| 74.11 | 0.404 | 9.83 | 0.038 | 1.37 | -- | -0.449 | -- | -0.241 | 0.866 | -- | -- | -- | -- |
| 74.96 | 0.405 | 9.83 | 0.0546 | 1.37 | -- | -- | -- | -0.238 | 0.856 | -- | -- | -- | -- |
| 115.21 | 0.5 | 9.74 | 0.455 | -- | -1.8 | -- | -- | 0.085 | -- | 20.25 | 2 | -- | -- |
| 64.26 | 0.375 | 9.81 | -- | 1.12 | -0.975 | -- | -- | -0.124 | 0.503 | 15.2 | 18 | -- | -- |
| 192.83 | 0.649 | 9.81 | 0.105 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 75.04 | 0.405 | 9.83 | -- | 1.38 | -- | -- | -- | -0.244 | 0.858 | -- | -- | -- | -- |
| 120.37 | 0.511 | 9.76 | -- | -- | -1.72 | -- | -- | 0.0143 | -- | 20.8 | 2 | -- | -- |
| 193.12 | 0.649 | 9.81 | -- | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 3 | 54.96 | temperature | 15 | 30 | > th | dose dependent | sin | 0 | NA |
| 10 | 55.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 14 |
| 11 | 55.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 13 | 55.30 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 27 | 55.54 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 32 | 55.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 110 | 56.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 148 | 57.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 177 | 57.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 182 | 57.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 333 | 58.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 341 | 58.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 473 | 59.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 605 | 60.12 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 8 |
| 695 | 60.50 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 697 | 60.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 813 | 60.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 860 | 61.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 6 |
| 948 | 61.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 951 | 61.20 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |