BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0295500 Os06g0295500|AK119433
(100 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0295500 Conserved hypothetical protein 172 3e-44
Os09g0443400 Conserved hypothetical protein 74 3e-14
Os12g0215100 71 1e-13
Os10g0209050 71 2e-13
Os11g0193300 71 2e-13
Os01g0807000 Conserved hypothetical protein 70 3e-13
Os07g0536400 68 2e-12
Os05g0320600 67 3e-12
>Os06g0295500 Conserved hypothetical protein
Length = 100
Score = 172 bits (437), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/100 (85%), Positives = 85/100 (85%)
Query: 1 QRLLRYWLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAPAPHRKEQ 60
QRLLRYWLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAPAPHRKEQ
Sbjct: 1 QRLLRYWLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAPAPHRKEQ 60
Query: 61 YXXXXXXXXXXXXXXXTADREACSPARAVHAEPHKGGRCR 100
Y TADREACSPARAVHAEPHKGGRCR
Sbjct: 61 YSAAYRPPMPSPSAPPTADREACSPARAVHAEPHKGGRCR 100
>Os09g0443400 Conserved hypothetical protein
Length = 733
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 7 WLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAP-APHRKEQY 61
W A+ KG +F+NDPLKHIDLH AVFSGRTVVGNHSAV GAAP AP Q+
Sbjct: 207 WWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGRTVVGNHSAVAGAAPQAPQGAVQW 262
>Os12g0215100
Length = 904
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 7 WLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAP-APHRKEQY 61
W A+ KG +F+NDPLKHIDLH AVFSG TVVGNHSAV GAAP AP Q+
Sbjct: 396 WWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVGNHSAVAGAAPQAPQGAVQW 451
>Os10g0209050
Length = 739
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 7 WLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAP-APHRKEQY 61
W A+ KG +F+NDPLKHIDLH AVFSG TVVGNHSAV GAAP AP Q+
Sbjct: 207 WWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVGNHSAVAGAAPQAPQGAVQW 262
>Os11g0193300
Length = 863
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 7 WLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAP-APHRKEQY 61
W A+ KG +F+NDPLKHIDLH AVFSG TVVGNHSAV GAAP AP Q+
Sbjct: 331 WWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVGNHSAVAGAAPQAPQGAVQW 386
>Os01g0807000 Conserved hypothetical protein
Length = 295
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 7 WLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAP-APHRKEQY 61
W A+ KG +F+NDPLKHIDLH VFSG TVVGNHSAV GAAP AP Q+
Sbjct: 98 WWESKNAQNKGVLSFRNDPLKHIDLHHTVFSGHTVVGNHSAVAGAAPQAPQGAVQW 153
>Os07g0536400
Length = 253
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 35/47 (74%)
Query: 7 WLLFFTARQKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAP 53
W A+ KG +F+NDPLKHIDLH AVFSG TVV NHSAV GAAP
Sbjct: 207 WWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVRNHSAVAGAAP 253
>Os05g0320600
Length = 527
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 33/41 (80%)
Query: 15 QKGASAFKNDPLKHIDLHQAVFSGRTVVGNHSAVTGAAPAP 55
+KG AF+NDPLKHIDLH AVFS RTVVGNHSAV GA P
Sbjct: 225 KKGVIAFRNDPLKHIDLHHAVFSTRTVVGNHSAVAGADQGP 265
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,273,898
Number of extensions: 100387
Number of successful extensions: 172
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 13
Length of query: 100
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 31
Effective length of database: 13,433,035
Effective search space: 416424085
Effective search space used: 416424085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)