Os01g0807000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0807000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.63 | 0.525 | 4.42 | -0.696 | 0.506 | -1.97 | -0.924 | 0.114 | 0.251 | 5.39 | 25.5 | 1743 | -- | -- |
| 124.61 | 0.52 | 4.42 | -0.674 | 0.516 | -1.96 | -0.911 | -- | 0.252 | 5.48 | 25.55 | 1791 | -- | -- |
| 126.67 | 0.524 | 4.42 | -0.711 | 0.513 | -1.94 | -- | 0.167 | 0.252 | 5.62 | 25.6 | 1795 | -- | -- |
| 126.68 | 0.524 | 4.41 | -0.683 | 0.512 | -1.96 | -- | -- | 0.257 | 5.65 | 25.56 | 1794 | -- | -- |
| 134.86 | 0.541 | 4.43 | -0.868 | -- | -1.77 | -- | 0.436 | 0.233 | -- | 25.35 | 2670 | -- | -- |
| 180.81 | 0.63 | 4.32 | -0.0347 | 0.481 | -- | -0.982 | -- | 0.697 | 5.3 | -- | -- | -- | -- |
| 183.21 | 0.634 | 4.31 | -0.0357 | 0.476 | -- | -- | -- | 0.701 | 5.4 | -- | -- | -- | -- |
| 134.98 | 0.541 | 4.43 | -0.797 | -- | -1.85 | -- | -- | 0.236 | -- | 25.3 | 2675 | -- | -- |
| 136.69 | 0.545 | 4.4 | -- | 0.421 | -1.71 | -- | -- | 0.372 | 5.79 | 25.7 | 1465 | -- | -- |
| 195 | 0.653 | 4.32 | -0.0197 | -- | -- | -- | -- | 0.713 | -- | -- | -- | -- | -- |
| 183.24 | 0.633 | 4.31 | -- | 0.475 | -- | -- | -- | 0.705 | 5.41 | -- | -- | -- | -- |
| 144.61 | 0.56 | 4.39 | -- | -- | -1.74 | -- | -- | 0.39 | -- | 25.7 | 1274 | -- | -- |
| 195.01 | 0.652 | 4.32 | -- | -- | -- | -- | -- | 0.715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.57 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 2 | 124.61 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 7 | 124.68 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 16 | 124.87 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 3 |
| 34 | 125.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 58 | 125.16 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 139 | 125.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 175 | 125.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 178 | 125.81 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 187 | 125.83 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 218 | 125.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 267 | 126.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 351 | 126.41 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 359 | 126.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 397 | 126.55 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 403 | 126.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 15 |
| 424 | 126.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 15 |
| 593 | 126.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 710 | 127.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 802 | 127.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 845 | 127.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 940 | 127.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |