BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0291100 Os06g0291100|J043017O10
         (90 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0291100  Hypothetical protein                                178   8e-46
Os12g0293501  Conserved hypothetical protein                      115   5e-27
Os07g0267200  Conserved hypothetical protein                      108   7e-25
Os11g0601901  Hypothetical protein                                105   9e-24
Os07g0468200  Hypothetical protein                                 69   7e-13
Os10g0329501  Hypothetical protein                                 67   3e-12

>Os06g0291100 Hypothetical protein
          Length = 90

 Score =  178 bits (451), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  KAAGWNFTPSTGTFVWFTILDVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRPP 60
          KAAGWNFTPSTGTFVWFTILDVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRPP
Sbjct: 1  KAAGWNFTPSTGTFVWFTILDVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRPP 60

Query: 61 QYVAQLDLELCVILAAPPPSTVVGVTLPPR 90
          QYVAQLDLELCVILAAPPPSTVVGVTLPPR
Sbjct: 61 QYVAQLDLELCVILAAPPPSTVVGVTLPPR 90



>Os12g0293501 Conserved hypothetical protein
          Length = 133

 Score =  115 bits (289), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 63/74 (85%)

Query: 17  FTILDVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRPPQYVAQLDLELCVILAA 76
           FTILDV LLVVKPGKTKPKVEVLLLAPHASMR  +G SLFPRPPQ  AQL LELCVILAA
Sbjct: 60  FTILDVRLLVVKPGKTKPKVEVLLLAPHASMRIVLGVSLFPRPPQNAAQLALELCVILAA 119

Query: 77  PPPSTVVGVTLPPR 90
           PP  TVV VTLPP 
Sbjct: 120 PPLLTVVRVTLPPH 133



>Os07g0267200 Conserved hypothetical protein
          Length = 80

 Score =  108 bits (271), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 62/79 (78%)

Query: 12 GTFVWFTILDVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRPPQYVAQLDLELC 71
          G FV     DVG LVVKPGKTKPKVEVLLLAPHA MR  VGASLFPRP Q+ AQL L LC
Sbjct: 2  GMFVRSIDPDVGPLVVKPGKTKPKVEVLLLAPHALMRIVVGASLFPRPLQHAAQLALGLC 61

Query: 72 VILAAPPPSTVVGVTLPPR 90
          VILAAP P TVVGVTLPP 
Sbjct: 62 VILAAPSPLTVVGVTLPPH 80



>Os11g0601901 Hypothetical protein
          Length = 109

 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 59/70 (84%)

Query: 21  DVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRPPQYVAQLDLELCVILAAPPPS 80
           +V  LVV PGKTKPKVEVLL A HA MRT VGASLFPRPPQ+  QL LELCVILAAPPP 
Sbjct: 40  NVEPLVVNPGKTKPKVEVLLPASHALMRTMVGASLFPRPPQHAVQLALELCVILAAPPPL 99

Query: 81  TVVGVTLPPR 90
           TVVGVTLPPR
Sbjct: 100 TVVGVTLPPR 109



>Os07g0468200 Hypothetical protein
          Length = 83

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 38/44 (86%)

Query: 21 DVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRPPQYVA 64
          +V  LVVKP KTKPKVEVLLLAPHA MRT VGASLFPRPPQ+ +
Sbjct: 40 NVEPLVVKPSKTKPKVEVLLLAPHALMRTTVGASLFPRPPQHAS 83



>Os10g0329501 Hypothetical protein
          Length = 83

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 35/39 (89%)

Query: 21 DVGLLVVKPGKTKPKVEVLLLAPHASMRTAVGASLFPRP 59
          DV  LVVKPGKTKPKVEVLLLAPHA MRT VGASLFPRP
Sbjct: 40 DVEPLVVKPGKTKPKVEVLLLAPHALMRTTVGASLFPRP 78



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,834,205
Number of extensions: 148186
Number of successful extensions: 374
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 6
Length of query: 90
Length of database: 17,035,801
Length adjustment: 60
Effective length of query: 30
Effective length of database: 13,902,961
Effective search space: 417088830
Effective search space used: 417088830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)