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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0468200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.97 (0.0404) R2 : 0.609
β1 : 1.23 (0.148) R2dD : 0.0427 R2D : 0.0221
β2 : 0.241 (0.115) R2dC : 0.00234 R2C : 0.038
β3 : 1.77 (0.0791) R2dE : 0.468 R2E : 0.526
β4 : 3.08 (0.483) R2dD*C : 0.0336 R2D*C : 0.0479
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.229 (0.0868) R2dN8 : 0.0131 R2N8 : 0.0162
σ : 0.754
deviance : 261.81
__
_____
C
peak time of C : 17.5
E
wheather : humidity
threshold : 88.42
memory length : 11
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.23
open length of G : 13.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
247.76 0.74 4.96 1.24 0.213 1.78 2.54 2.16 0.326 20.1 88.78 11 6 13.9
261.81 0.754 4.97 1.23 0.241 1.77 3.08 -- 0.229 17.5 88.42 11 6.23 13.7
265.12 0.758 4.96 1.14 0.211 1.77 -- 1.6 0.322 19.9 88.98 11 6 13.9
280.85 0.781 4.96 1.03 0.274 1.84 -- -- 0.33 20.4 88.13 10 6.3 13.6
267.29 0.761 4.96 1.14 -- 1.77 -- 1.62 0.324 -- 89 11 6.02 13.9
374.98 0.908 4.9 1.06 2 -- 2 -- 0.56 14.2 -- -- -- --
389.1 0.924 4.89 1.11 1.99 -- -- -- 0.57 14 -- -- -- --
283.67 0.784 4.96 1.06 -- 1.77 -- -- 0.35 -- 88.84 9 6.32 13.6
311.08 0.821 4.96 -- 0.272 1.84 -- -- 0.326 20.4 88.65 10 6.3 13.6
627.97 1.17 4.91 1.03 -- -- -- -- 0.523 -- -- -- -- --
421.66 0.961 4.91 -- 1.97 -- -- -- 0.446 14 -- -- -- --
311.65 0.822 4.98 -- -- 1.77 -- -- 0.178 -- 88.1 7 6.42 13.5
655.88 1.2 4.93 -- -- -- -- -- 0.409 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.87 humidity 50.0 10 > th dose dependent rect. 10 20
4 261.93 humidity 90.0 10 < th dose independent rect. 6 14
8 265.27 radiation 10.0 90 < th dose dependent rect. 19 23
12 266.82 temperature 10.0 10 > th dose dependent rect. 6 14
29 273.69 temperature 30.0 90 < th dose independent rect. 11 19
31 273.94 radiation 10.0 90 < th dose dependent rect. 7 23
44 280.02 temperature 30.0 10 < th dose independent rect. 12 18
46 280.19 temperature 10.0 30 > th dose dependent rect. 6 21
56 280.88 radiation 10.0 90 < th dose dependent rect. 10 22
59 281.18 radiation 10.0 90 < th dose dependent rect. 10 20
65 281.88 humidity 90.0 30 < th dose independent sin 1 NA
67 281.95 radiation 10.0 90 < th dose dependent sin 8 NA
75 282.42 radiation 10.0 90 < th dose dependent rect. 12 23
80 282.84 radiation 10.0 90 < th dose dependent no NA NA
85 283.36 radiation 1.0 30 > th dose independent rect. 6 13
97 283.41 radiation 10.0 90 < th dose dependent rect. 17 23
106 283.86 humidity 70.0 10 > th dose independent rect. 12 18
108 283.89 humidity 60.0 10 > th dose independent rect. 10 20
123 284.59 radiation 10.0 90 < th dose dependent rect. 15 23
126 284.67 radiation 10.0 270 < th dose independent rect. 9 20
143 285.87 humidity 90.0 30 < th dose independent rect. 6 4
175 287.54 atmosphere 1015.0 10 < th dose independent rect. 20 10
177 287.69 humidity 90.0 90 < th dose independent rect. 5 6
212 289.23 humidity 80.0 10 > th dose dependent rect. 3 14
229 289.58 humidity 80.0 10 > th dose dependent sin 2 NA
301 292.72 humidity 50.0 90 > th dose dependent rect. 19 11
304 292.90 radiation 1.0 90 < th dose independent rect. 19 23
308 293.08 humidity 50.0 10 > th dose dependent rect. 20 10
327 293.80 humidity 80.0 10 > th dose dependent rect. 3 20
328 293.81 radiation 10.0 90 < th dose dependent rect. 3 14
338 294.11 precipitation 0.1 10 < th dose independent rect. 6 14
339 294.11 precipitation 0.1 10 < th dose dependent rect. 6 14
350 294.42 wind 9.0 10 < th dose independent rect. 6 14
367 294.90 radiation 1.0 270 > th dose independent rect. 4 4
380 294.98 temperature 30.0 30 < th dose independent rect. 15 15
388 295.20 atmosphere 1015.0 30 < th dose independent rect. 10 20
418 295.87 temperature 15.0 10 > th dose independent rect. 20 10
420 295.90 radiation 1.0 270 > th dose independent rect. 6 1
429 296.22 radiation 1.0 90 > th dose independent rect. 6 5
432 296.29 radiation 10.0 90 < th dose dependent rect. 3 23
451 296.77 wind 9.0 10 < th dose independent rect. 20 10
457 296.92 temperature 30.0 10 < th dose independent rect. 20 10
458 296.92 humidity 50.0 10 > th dose independent rect. 20 10
461 296.92 atmosphere 995.0 10 > th dose independent rect. 20 10
462 296.92 radiation 20.0 10 < th dose independent rect. 20 10
465 296.92 temperature 10.0 10 > th dose independent rect. 6 14
467 296.92 atmosphere 1015.0 10 < th dose independent rect. 6 14
468 296.92 temperature 10.0 10 > th dose dependent rect. 6 4
477 297.12 precipitation 0.1 10 < th dose independent rect. 20 10
481 297.12 precipitation 0.1 10 < th dose dependent rect. 20 10
482 297.15 radiation 1.0 720 < th dose independent rect. 1 5
497 297.34 radiation 10.0 90 < th dose dependent rect. 1 23
504 297.43 temperature 10.0 10 > th dose dependent rect. 20 10
506 297.47 wind 9.0 10 < th dose dependent rect. 20 10
513 297.58 radiation 1.0 90 > th dose independent sin 5 NA
514 297.59 temperature 10.0 720 > th dose dependent rect. 6 2
516 297.65 radiation 1.0 270 > th dose independent sin 11 NA
543 297.88 atmosphere 1010.0 270 < th dose independent rect. 6 1
553 298.07 atmosphere 995.0 30 > th dose independent rect. 10 20
587 298.58 temperature 10.0 1440 > th dose independent rect. 21 10
590 298.58 temperature 30.0 1440 < th dose independent rect. 21 10
594 298.58 humidity 50.0 1440 > th dose independent rect. 21 10
599 298.58 atmosphere 995.0 1440 > th dose independent rect. 21 10
600 298.58 radiation 40.0 1440 < th dose independent rect. 21 10
604 298.58 temperature 10.0 1440 > th dose independent rect. 7 14
621 298.78 wind 7.0 270 < th dose dependent rect. 6 1
640 299.07 radiation 1.0 720 < th dose dependent rect. 1 5
705 300.15 radiation 1.0 90 > th dose independent rect. 17 18
713 300.24 radiation 1.0 90 > th dose independent rect. 16 23
714 300.26 wind 5.0 270 < th dose independent rect. 6 1
742 300.51 radiation 1.0 90 < th dose independent sin 8 NA
766 300.77 radiation 1.0 90 > th dose dependent sin 11 NA
776 300.94 radiation 40.0 90 < th dose dependent rect. 19 11
780 300.97 precipitation 0.1 10 < th dose independent rect. 6 4
781 300.97 precipitation 0.1 10 < th dose dependent rect. 6 4
800 301.25 radiation 1.0 270 < th dose independent sin 10 NA
804 301.31 atmosphere 1010.0 30 < th dose independent rect. 6 4
805 301.31 humidity 60.0 10 > th dose dependent sin 8 NA
806 301.35 wind 9.0 30 < th dose independent rect. 6 4
807 301.35 temperature 10.0 30 > th dose independent rect. 6 4
809 301.35 humidity 50.0 30 > th dose independent rect. 6 4
810 301.35 atmosphere 995.0 30 > th dose independent rect. 6 4
812 301.35 temperature 10.0 30 > th dose independent rect. 10 20
831 301.49 temperature 10.0 1440 > th dose independent rect. 7 4
834 301.49 atmosphere 995.0 1440 > th dose independent rect. 7 4
835 301.49 temperature 10.0 1440 > th dose independent rect. 11 20
843 301.57 wind 1.0 10 > th dose independent rect. 6 4
848 301.66 precipitation 0.1 270 < th dose independent rect. 6 1
851 301.66 precipitation 0.1 270 < th dose dependent rect. 6 1
861 301.75 temperature 10.0 270 > th dose independent rect. 6 1
863 301.75 temperature 30.0 270 < th dose independent rect. 6 1
864 301.75 humidity 50.0 270 > th dose independent rect. 6 1
866 301.75 atmosphere 995.0 270 > th dose independent rect. 6 1
868 301.75 radiation 40.0 270 < th dose independent rect. 6 1
870 301.75 temperature 10.0 270 > th dose independent rect. 7 23
873 301.77 radiation 1.0 720 < th dose dependent rect. 1 10
875 301.78 precipitation 0.1 10 < th dose independent rect. 10 20
877 301.78 precipitation 0.1 10 < th dose dependent rect. 10 20
881 301.81 radiation 10.0 90 < th dose dependent rect. 19 13
915 302.16 humidity 80.0 10 > th dose dependent rect. 24 23
919 302.22 precipitation 0.1 720 < th dose independent rect. 5 13
920 302.22 precipitation 0.1 720 < th dose dependent rect. 5 13
938 302.45 radiation 10.0 90 < th dose dependent rect. 19 16
942 302.51 temperature 30.0 270 < th dose independent rect. 1 14
954 302.61 humidity 70.0 10 > th dose dependent rect. 20 22
956 302.64 radiation 1.0 90 < th dose independent rect. 3 14
966 302.74 humidity 50.0 10 > th dose dependent rect. 3 14