BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0284800 Os06g0284800|AK066358
(315 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0284800 Spectrin repeat containing protein 449 e-127
Os09g0476000 Prefoldin domain containing protein 113 2e-25
>Os06g0284800 Spectrin repeat containing protein
Length = 315
Score = 449 bits (1156), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/315 (75%), Positives = 238/315 (75%)
Query: 1 MLDRSLRXXXXXXXXXXXXXXXXXXXXXXNVDRVLFKNLVEMVPLVESLMDRRSNPSYSR 60
MLDRSLR NVDRVLFKNLVEMVPLVESLMDRRSNPSYSR
Sbjct: 1 MLDRSLRPPQPQQAAAEAEAGPGGGEGGGNVDRVLFKNLVEMVPLVESLMDRRSNPSYSR 60
Query: 61 RASMVYTPAPAKKGSDLXXXXXXXXXXXXXRRDPGETGKKSTADSNGENGAVAPVGLLGG 120
RASMVYTPAPAKKGSDL RRDPGETGKKSTADSNGENGAVAPVGLLGG
Sbjct: 61 RASMVYTPAPAKKGSDLKSVKSPQSVSVKKRRDPGETGKKSTADSNGENGAVAPVGLLGG 120
Query: 121 ENKPKDKDEIVLLRXXXXXXXXXXXXXXXXXXXXXXXVGEMNTLYSTVDELRRQVADKEG 180
ENKPKDKDEIVLLR VGEMNTLYSTVDELRRQVADKEG
Sbjct: 121 ENKPKDKDEIVLLREQIEELQKTLLEKEEALKSAESLVGEMNTLYSTVDELRRQVADKEG 180
Query: 181 LIKSINSQLHNAKIMLADKQASLEKLEWEVKTSNKKVEDLQGDVSNMEFEIGSLMALFEK 240
LIKSINSQLHNAKIMLADKQASLEKLEWEVKTSNKKVEDLQGDVSNMEFEIGSLMALFEK
Sbjct: 181 LIKSINSQLHNAKIMLADKQASLEKLEWEVKTSNKKVEDLQGDVSNMEFEIGSLMALFEK 240
Query: 241 ISENVSGELQDGSLPSSFELEALQSTSEIDKIEVEKIEQXXXXXXXXXXXXXXXXXXXQL 300
ISENVSGELQDGSLPSSFELEALQSTSEIDKIEVEKIEQ QL
Sbjct: 241 ISENVSGELQDGSLPSSFELEALQSTSEIDKIEVEKIEQEAVTYAEALAAARENPNEEQL 300
Query: 301 NIAAEARLRLQVLVL 315
NIAAEARLRLQVLVL
Sbjct: 301 NIAAEARLRLQVLVL 315
>Os09g0476000 Prefoldin domain containing protein
Length = 265
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 93/162 (57%), Gaps = 7/162 (4%)
Query: 158 VGEMNTLYSTVDELRRQVADKEGLIKSINSQLHNAKIMLADKQASLEKLEWEVKTSNKKV 217
+ ++ + VDELR Q+ +KE I+S S+LH AKI LA+KQA+LEKLEWE K S+ KV
Sbjct: 107 ISRISAANAAVDELRGQLTEKESQIESTGSELHGAKIQLAEKQAALEKLEWEAKVSSTKV 166
Query: 218 EDLQGDVSNMEFEIGSLMALFEKISEN----VSGELQDGSLPSSFELEALQSTSEIDKIE 273
E+LQ DV++M+ EI +LM LF KI+EN S E D SS E E +Q + I+
Sbjct: 167 EELQVDVASMDVEISALMKLFRKITENDRAPYSRERADD---SSLECEPVQLDDMVGDID 223
Query: 274 VEKIEQXXXXXXXXXXXXXXXXXXXQLNIAAEARLRLQVLVL 315
+EK+EQ L EARLRLQ VL
Sbjct: 224 MEKMEQEMSAYATALAAAKDNPTDEFLKAVTEARLRLQAFVL 265
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.129 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,941,951
Number of extensions: 230966
Number of successful extensions: 810
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 214
Effective length of database: 11,762,187
Effective search space: 2517108018
Effective search space used: 2517108018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 156 (64.7 bits)