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Os09g0476000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prefoldin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0216) R2 : 0.55
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.08 (0.0559) R2dC : 0.369 R2C : 0.382
β3 : 0.799 (0.0662) R2dE : 0.145 R2E : 0.158
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.227 (0.0456) R2dN8 : 0.0319 R2N8 : 0.00959
σ : 0.406
deviance : 75.91
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_____
C
peak time of C : 4.52
E
wheather : temperature
threshold : 29.64
memory length : 1714
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.34 0.397 12.9 -0.785 1.17 0.395 0.902 2.02 -0.349 4.57 29.8 1457 -- --
71.66 0.394 12.9 -0.344 1.07 0.681 0.958 -- -0.25 4.5 29.7 1696 -- --
72.73 0.397 12.9 -0.764 1.1 0.501 -- 2.12 -0.334 4.53 29.69 1722 -- --
73.11 0.398 12.9 -0.333 1.08 0.732 -- -- -0.245 4.51 29.7 1726 -- --
93.8 0.451 12.9 -0.515 -- 0.995 -- 1.25 -0.229 -- 28.18 373 -- --
90.79 0.447 12.9 -0.535 1.12 -- 0.768 -- -0.241 4.67 -- -- -- --
92.34 0.45 12.9 -0.539 1.13 -- -- -- -0.245 4.66 -- -- -- --
92.32 0.448 12.9 -0.289 -- 1.12 -- -- -0.073 -- 28.11 314 -- --
75.91 0.406 12.9 -- 1.08 0.799 -- -- -0.227 4.52 29.64 1714 -- --
160.03 0.591 12.9 -0.496 -- -- -- -- -0.215 -- -- -- -- --
99.99 0.468 12.9 -- 1.12 -- -- -- -0.185 4.67 -- -- -- --
94.5 0.453 12.8 -- -- 1.16 -- -- -0.0402 -- 28.2 314 -- --
166.51 0.602 12.9 -- -- -- -- -- -0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.06 precipitation 0.1 14400 > th dose dependent rect. 17 6
5 69.29 temperature 20.0 720 > th dose dependent rect. 4 5
8 69.39 humidity 70.0 1440 > th dose independent rect. 17 1
9 69.44 humidity 70.0 1440 > th dose independent rect. 16 3
11 69.62 humidity 60.0 4320 < th dose independent rect. 12 1
12 69.62 precipitation 0.1 14400 < th dose independent rect. 17 6
13 69.62 precipitation 0.1 14400 < th dose dependent rect. 17 6
14 69.62 temperature 20.0 10 > th dose dependent rect. 5 15
16 69.65 humidity 60.0 4320 > th dose independent rect. 11 2
17 69.65 humidity 70.0 1440 > th dose independent rect. 16 18
18 69.66 temperature 20.0 720 > th dose dependent rect. 7 2
19 69.67 precipitation 0.1 14400 > th dose independent rect. 17 6
54 70.27 temperature 25.0 720 > th dose independent rect. 6 3
56 70.30 humidity 70.0 1440 < th dose independent rect. 16 2
68 70.45 humidity 70.0 1440 > th dose independent rect. 16 21
81 70.59 precipitation 0.1 43200 > th dose dependent rect. 20 1
86 70.68 precipitation 0.1 43200 > th dose dependent rect. 16 2
89 70.71 humidity 70.0 1440 > th dose independent rect. 16 8
90 70.71 humidity 70.0 1440 > th dose independent rect. 16 14
92 70.71 humidity 70.0 1440 < th dose independent rect. 16 18
102 70.74 precipitation 0.1 14400 > th dose dependent rect. 8 15
112 70.78 precipitation 0.1 14400 > th dose dependent rect. 6 17
115 70.80 precipitation 0.1 14400 > th dose dependent rect. 10 13
120 70.85 humidity 60.0 14400 < th dose independent rect. 17 1
123 70.86 humidity 70.0 1440 > th dose independent sin 11 NA
139 70.95 precipitation 0.1 14400 > th dose dependent rect. 20 22
155 71.02 radiation 10.0 43200 > th dose independent rect. 8 2
175 71.09 temperature 25.0 720 > th dose dependent rect. 21 13
194 71.19 humidity 70.0 1440 < th dose independent rect. 16 21
200 71.22 precipitation 0.1 14400 > th dose dependent sin 17 NA
207 71.28 wind 9.0 14400 > th dose dependent rect. 18 17
208 71.30 temperature 30.0 1440 < th dose independent rect. 15 2
209 71.30 temperature 30.0 1440 < th dose independent rect. 11 5
211 71.31 temperature 30.0 1440 < th dose independent rect. 14 4
212 71.31 wind 9.0 14400 < th dose independent rect. 18 17
223 71.40 radiation 10.0 43200 > th dose independent rect. 8 5
227 71.40 wind 9.0 14400 > th dose dependent rect. 20 15
233 71.44 temperature 20.0 14400 < th dose independent rect. 21 1
235 71.44 temperature 30.0 1440 > th dose independent rect. 14 4
237 71.44 temperature 30.0 1440 < th dose independent rect. 4 12
241 71.44 temperature 30.0 1440 < th dose independent rect. 21 19
243 71.44 temperature 30.0 1440 < th dose independent rect. 12 21
244 71.44 precipitation 0.1 14400 > th dose dependent rect. 5 13
248 71.45 temperature 30.0 1440 < th dose independent rect. 8 8
252 71.45 temperature 30.0 1440 < th dose independent rect. 23 17
255 71.45 radiation 1.0 43200 < th dose dependent rect. 24 2
256 71.46 temperature 30.0 1440 > th dose independent rect. 15 2
261 71.47 humidity 60.0 14400 > th dose independent rect. 17 1
265 71.48 temperature 30.0 1440 < th dose independent rect. 12 12
268 71.49 temperature 30.0 1440 < th dose independent rect. 12 10
272 71.49 temperature 30.0 1440 < th dose independent rect. 12 17
285 71.50 temperature 20.0 14400 > th dose independent rect. 21 1
302 71.50 humidity 70.0 1440 < th dose dependent rect. 12 1
311 71.52 precipitation 0.1 14400 > th dose dependent rect. 8 10
329 71.55 temperature 30.0 1440 < th dose independent sin 20 NA
379 71.59 temperature 30.0 1440 > th dose independent rect. 11 5
387 71.60 temperature 30.0 1440 > th dose independent rect. 14 19
442 71.66 precipitation 0.1 14400 > th dose dependent rect. 17 14
457 71.67 wind 9.0 14400 > th dose independent rect. 18 17
463 71.68 temperature 30.0 1440 < th dose independent rect. 3 21
468 71.69 temperature 30.0 1440 < th dose independent rect. 8 15
494 71.69 temperature 30.0 1440 < th dose independent rect. 7 22
502 71.69 humidity 80.0 1440 < th dose dependent rect. 8 12
504 71.70 temperature 30.0 1440 < th dose independent no NA NA
565 71.71 temperature 30.0 1440 > th dose independent rect. 8 8
676 71.78 radiation 40.0 1440 > th dose dependent rect. 12 1
680 71.79 precipitation 0.1 14400 > th dose dependent rect. 17 16
681 71.80 temperature 30.0 1440 > th dose independent sin 19 NA
684 71.80 wind 9.0 14400 > th dose independent rect. 20 15
686 71.80 humidity 60.0 4320 > th dose independent rect. 22 16
697 71.81 humidity 60.0 4320 > th dose independent rect. 4 10
712 71.82 precipitation 0.1 14400 < th dose independent rect. 17 2
726 71.82 precipitation 0.1 14400 < th dose dependent rect. 17 2
755 71.85 temperature 20.0 14400 > th dose independent rect. 19 4
794 71.90 temperature 10.0 720 > th dose dependent rect. 4 7
827 71.94 temperature 30.0 1440 > th dose independent no NA NA
828 71.94 precipitation 0.1 14400 > th dose independent rect. 17 2
989 72.04 humidity 80.0 1440 < th dose dependent rect. 16 22
999 72.06 humidity 80.0 4320 < th dose dependent rect. 18 2