Os06g0284800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spectrin repeat containing protein.
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Os06g0284800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spectrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.07 | 0.308 | 10 | -1.32 | 0.123 | 1.39 | 0.397 | -2.64 | 0.438 | 5.3 | 22.78 | 1242 | -- | -- |
| 47.21 | 0.32 | 9.92 | -0.566 | 0.124 | 1.19 | 0.323 | -- | 0.623 | 6.36 | 22.22 | 1229 | -- | -- |
| 43.43 | 0.307 | 10 | -1.29 | 0.123 | 1.38 | -- | -2.52 | 0.442 | 5.67 | 22.69 | 1250 | -- | -- |
| 47.39 | 0.321 | 9.92 | -0.571 | 0.129 | 1.18 | -- | -- | 0.63 | 5.7 | 21.99 | 1234 | -- | -- |
| 44.23 | 0.31 | 10 | -1.31 | -- | 1.4 | -- | -2.58 | 0.435 | -- | 22.77 | 1265 | -- | -- |
| 92.55 | 0.451 | 9.86 | -0.172 | 0.276 | -- | 0.352 | -- | 0.887 | 3.24 | -- | -- | -- | -- |
| 92.95 | 0.451 | 9.86 | -0.179 | 0.277 | -- | -- | -- | 0.885 | 3.1 | -- | -- | -- | -- |
| 48.21 | 0.323 | 9.92 | -0.573 | -- | 1.19 | -- | -- | 0.632 | -- | 22.09 | 1258 | -- | -- |
| 55.2 | 0.346 | 9.89 | -- | 0.133 | 1.04 | -- | -- | 0.727 | 5.61 | 22.3 | 1215 | -- | -- |
| 97.33 | 0.461 | 9.86 | -0.167 | -- | -- | -- | -- | 0.892 | -- | -- | -- | -- | -- |
| 93.79 | 0.453 | 9.86 | -- | 0.273 | -- | -- | -- | 0.905 | 3.1 | -- | -- | -- | -- |
| 56.09 | 0.349 | 9.9 | -- | -- | 1.05 | -- | -- | 0.724 | -- | 22.3 | 1235 | -- | -- |
| 98.06 | 0.462 | 9.85 | -- | -- | -- | -- | -- | 0.911 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 10 | 44.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 11 | 44.17 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 28 | 44.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 70 | 44.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 181 | 44.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 279 | 44.90 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 295 | 44.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 325 | 45.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 330 | 45.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 363 | 45.20 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 393 | 45.26 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 394 | 45.26 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 429 | 45.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 483 | 45.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 488 | 45.44 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 593 | 45.60 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 594 | 45.60 | wind | 7 | 43200 | < th | dose independent | sin | 2 | NA |
| 596 | 45.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 602 | 45.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 641 | 45.67 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 642 | 45.67 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 731 | 45.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 745 | 45.88 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 760 | 45.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 779 | 45.96 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 806 | 46.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 828 | 46.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 831 | 46.05 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 837 | 46.07 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 850 | 46.09 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 857 | 46.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 874 | 46.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 913 | 46.18 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 919 | 46.19 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 925 | 46.20 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 940 | 46.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 17 |
| 962 | 46.24 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 967 | 46.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 981 | 46.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 999 | 46.28 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 17 |