BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0284800 Os06g0284800|AK066358
         (315 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08120.1  | chr5:2600743-2602678 REVERSE LENGTH=327            108   3e-24

>AT5G08120.1 | chr5:2600743-2602678 REVERSE LENGTH=327
          Length = 326

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 30  NVDRVLFKNLVEMVPLVESLMDRRSNPSYSRRASMVYTPAPAKKGSDLXXXXXXXXXXXX 89
           N+DR L K+LVEMVPL+E  M+ +   S+ RR SM+YT  P+K+   L            
Sbjct: 47  NLDRRLLKDLVEMVPLIEHYMEHKERSSFKRRGSMIYTKMPSKES--LSRRGRNASQTVP 104

Query: 90  XRRDPGETGKKSTADSNGENGAVAPVGLLGGENKPKDKDEIVLLRXXXXXXXXXXXXXXX 149
            R+   + G     +++ E+   A   L G E     K+E+  LR               
Sbjct: 105 GRKKRDQEGNDDVMNNSREDDENAK-ALAGAE-----KEEMSRLREQVNDLQTKLSEKEE 158

Query: 150 XXXXXXXXVGEMNTLYSTVDELRRQVADKEGLIKSINSQLHNAKIMLADKQASLEKLEWE 209
                     ++N +   ++   R VA+K+ LIKS+  QL + KI LADKQA+LEK +WE
Sbjct: 159 VLKSMEMSKNQVNEIQEKLEATNRLVAEKDMLIKSMQLQLSDTKIKLADKQAALEKTQWE 218

Query: 210 VKTSNKKVEDLQGDVSNMEFEIGSLMALFEKISENVSGELQDGSLPSSFELEALQSTSEI 269
            KT+  +   LQ  +  +E +I +   +FE +++  S +         +E + L    ++
Sbjct: 219 AKTTGTRAIKLQEQLDAVEGDISTFTRVFETLAKTDSKKPDRDYDAVPYEFDHLPYLDDV 278

Query: 270 DKIEVEKIEQXXXXXXXXXXXXXXXXXXXQLNIAAEARLRLQVLVL 315
           D+ ++ K+E+                    L +AA+AR  LQ L  
Sbjct: 279 DETDLRKMEEARLAYVAAVNTAKEREDEESLVMAAQARAYLQSLAF 324



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,624,940
Number of extensions: 157661
Number of successful extensions: 661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 112 (47.8 bits)