BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0269300 Os06g0269300|AK122070
(517 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0269300 Soluble quinoprotein glucose dehydrogenase dom... 839 0.0
Os02g0730400 Conserved hypothetical protein 669 0.0
Os02g0234200 Soluble quinoprotein glucose dehydrogenase dom... 221 8e-58
Os08g0414600 Soluble quinoprotein glucose dehydrogenase dom... 122 5e-28
>Os06g0269300 Soluble quinoprotein glucose dehydrogenase domain containing
protein
Length = 517
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/458 (91%), Positives = 421/458 (91%)
Query: 35 YPAKVVTGLLSSTASAVVKQLWSLKXXXXXXXXXXXXXXMVKYEGGYAVETVFDGSKLGI 94
YPAKVVTGLLSSTASAVVKQLWSLK MVKYEGGYAVETVFDGSKLGI
Sbjct: 35 YPAKVVTGLLSSTASAVVKQLWSLKSTATRTGSAAAGRSMVKYEGGYAVETVFDGSKLGI 94
Query: 95 EPHDVEVTPSGELLVLDSMNSNVYRVQLPLSRYSRPKLVAGSPEGLSGHVDGRLREAKMN 154
EPHDVEVTPSGELLVLDSMNSNVYRVQLPLSRYSRPKLVAGSPEGLSGHVDGRLREAKMN
Sbjct: 95 EPHDVEVTPSGELLVLDSMNSNVYRVQLPLSRYSRPKLVAGSPEGLSGHVDGRLREAKMN 154
Query: 155 HPKGFTVDDRGNIYVADAMNMAIRKISDTGVTTIAGGKSMRGGHLDGPSDDAKFSTDFEI 214
HPKGFTVDDRGNIYVADAMNMAIRKISDTGVTTIAGGKSMRGGHLDGPSDDAKFSTDFEI
Sbjct: 155 HPKGFTVDDRGNIYVADAMNMAIRKISDTGVTTIAGGKSMRGGHLDGPSDDAKFSTDFEI 214
Query: 215 RYISSSCSLLVIDRGNQAIREIALHNDDCEYQYEAGFPLGIALLFAAGFFGYMLALLQRQ 274
RYISSSCSLLVIDRGNQAIREIALHNDDCEYQYEAGFPLGIALLFAAGFFGYMLALLQRQ
Sbjct: 215 RYISSSCSLLVIDRGNQAIREIALHNDDCEYQYEAGFPLGIALLFAAGFFGYMLALLQRQ 274
Query: 275 VLGMVSTADEPQTPPRPSIASIPPYQKPLKPSLRPPLIPTEDQAGKHEAEEGFFTSIGKL 334
VLGMVSTADEPQTPPRPSIASIPPYQKPLKPSLRPPLIPTEDQAGKHEAEEGFFTSIGKL
Sbjct: 275 VLGMVSTADEPQTPPRPSIASIPPYQKPLKPSLRPPLIPTEDQAGKHEAEEGFFTSIGKL 334
Query: 335 IGGAKSSAVEIFSRKKRPTHQYHHHLQQQRANPWPVQESYAIPHDETPPPLDMRAATPRK 394
IGGAKSSAVEIFSRKKRPTHQYHHHLQQQRANPWPVQESYAIPHDETPPPLDMRAATPRK
Sbjct: 335 IGGAKSSAVEIFSRKKRPTHQYHHHLQQQRANPWPVQESYAIPHDETPPPLDMRAATPRK 394
Query: 395 NYAFMTKEPEKVHHVRHGRPYFNGWDMXXXXXXXXXXXXXXXXXXXXXXXYSAGPQTFYE 454
NYAFMTKEPEKVHHVRHGRPYFNGWDM YSAGPQTFYE
Sbjct: 395 NYAFMTKEPEKVHHVRHGRPYFNGWDMQHAPQQQPEQQMYHQQHLQQHRQYSAGPQTFYE 454
Query: 455 QSCETTNEIVFGAVQEVDTKRRMVEIKAVNYGDTFYEQ 492
QSCETTNEIVFGAVQEVDTKRRMVEIKAVNYGDTFYEQ
Sbjct: 455 QSCETTNEIVFGAVQEVDTKRRMVEIKAVNYGDTFYEQ 492
>Os02g0730400 Conserved hypothetical protein
Length = 508
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/467 (72%), Positives = 368/467 (78%), Gaps = 16/467 (3%)
Query: 35 YPAKVVTGLLSSTASAVVKQLWSLKXXXXXXXXXXXXXXMVKYEGGYAVETVFDGSKLGI 94
YPAKVV+G LS+ AS+V+K+LWSLK MVKYEGGY VETVFDGSKLGI
Sbjct: 33 YPAKVVSGFLSNAASSVMKRLWSLKSTTKTGSGGKS---MVKYEGGYTVETVFDGSKLGI 89
Query: 95 EPHDVEVTPSGELLVLDSMNSNVYRVQLPLSRYSRPKLVAGSPEGLSGHVDGRLREAKMN 154
EP+ VEVT GELLV+DSMNSN+YR+ LPLSRYSRPKLVAGSPEG GHVDGR REA+MN
Sbjct: 90 EPYAVEVTQGGELLVMDSMNSNIYRIALPLSRYSRPKLVAGSPEGFPGHVDGRPREARMN 149
Query: 155 HPKGFTVDDRGNIYVADAMNMAIRKISDTGVTTIAGGKSMRGGHLDGPSDDAKFSTDFEI 214
HPKGFTVD RGNIYVADAMNMAIRKISDTGVTTIAGGKS RGGH+DGPSDDAKFSTDFE+
Sbjct: 150 HPKGFTVDGRGNIYVADAMNMAIRKISDTGVTTIAGGKSSRGGHVDGPSDDAKFSTDFEV 209
Query: 215 RYISSSCSLLVIDRGNQAIREIALHNDDCEYQYEAGFPLGIALLFAAGFFGYMLALLQRQ 274
RYI SSCSLLVIDRGNQAIREI L+ DDC YQYEAGFPLG+A+L AA FFGYMLALLQR+
Sbjct: 210 RYIGSSCSLLVIDRGNQAIREIQLNFDDCVYQYEAGFPLGVAVLLAAAFFGYMLALLQRR 269
Query: 275 VLGMVSTADEP--QTPPRPSIASIPPYQKPLKPSLRPPLIPTEDQAGKHEAEEGFFTSIG 332
VLGMVST DEP QTP + SIASIPPYQKPLK S+RPPLIP ED++ K E EEGFFTSIG
Sbjct: 270 VLGMVSTEDEPETQTPLKASIASIPPYQKPLKQSVRPPLIPNEDESEKQEVEEGFFTSIG 329
Query: 333 KLIGGAKSSAVEI----FSRKKRPTHQYHHHLQQQRANPWPVQESYAIPHDETPPPLDMR 388
KLI GAKSS EI FSRKKR + H QQ R WPVQESYAIP DETPPPLD R
Sbjct: 330 KLIVGAKSSVAEIVGAAFSRKKR----LNIHQQQARVRSWPVQESYAIPRDETPPPLDTR 385
Query: 389 AATPRKNYAFMTKEPEKVHHVRHGRPYFNGWDMXX---XXXXXXXXXXXXXXXXXXXXXY 445
TPRKNYAFM+KEPEK+HH+RHGR FNGW+ Y
Sbjct: 386 TPTPRKNYAFMSKEPEKIHHIRHGRSQFNGWNGDAPQQQQQQQQQQQIHHQQYLQHHRQY 445
Query: 446 SAGPQTFYEQSCETTNEIVFGAVQEVDTKRRMVEIKAVNYGDTFYEQ 492
S+GPQTFYE SCE TNEIVFGAVQEVD+KRR VEIK +N+GD Y+Q
Sbjct: 446 SSGPQTFYEPSCEATNEIVFGAVQEVDSKRRAVEIKPMNHGDPQYDQ 492
>Os02g0234200 Soluble quinoprotein glucose dehydrogenase domain containing
protein
Length = 493
Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 142/200 (71%), Gaps = 2/200 (1%)
Query: 75 VKYEGGYAVETVFDGSKLGIEPHDVEVTP--SGELLVLDSMNSNVYRVQLPLSRYSRPKL 132
+++E GY VET+ +G KLG+ PH + V+P GELL +DS +SN+ R+ PLS YSR +L
Sbjct: 69 LQFESGYFVETLVEGDKLGVTPHTIRVSPVEGGELLAVDSAHSNIVRITPPLSEYSRGRL 128
Query: 133 VAGSPEGLSGHVDGRLREAKMNHPKGFTVDDRGNIYVADAMNMAIRKISDTGVTTIAGGK 192
VAGS +G SGH+DG+ +A+ P G VDD GN+YVAD N+AIRKI ++GVTTIAGGK
Sbjct: 129 VAGSFQGHSGHIDGKPSDARFKRPTGVAVDDTGNVYVADTANLAIRKIGESGVTTIAGGK 188
Query: 193 SMRGGHLDGPSDDAKFSTDFEIRYISSSCSLLVIDRGNQAIREIALHNDDCEYQYEAGFP 252
S G+ DGPS+DAKFSTDF++ Y+ CSLLVIDRGN A+R+IAL +DC YQ
Sbjct: 189 SNIPGYRDGPSEDAKFSTDFDVVYVKKMCSLLVIDRGNAALRKIALPQEDCTYQDATLLS 248
Query: 253 LGIALLFAAGFFGYMLALLQ 272
I L+ A GY+ +++Q
Sbjct: 249 SDIILVIGAVVAGYIFSVVQ 268
>Os08g0414600 Soluble quinoprotein glucose dehydrogenase domain containing
protein
Length = 275
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 78 EGGYAVETVFDGSKLGI--EPHDVEVTP---SGELLVLDSMNSNVYRVQLPLSRYSRPKL 132
+ GY V T D + G PH + P +G+L++LDS S +Y + LPLS + +
Sbjct: 30 DDGYTVTTAADLNHPGAPAAPHPYALLPRPRAGDLVLLDSAASALYTLALPLSGGAAART 89
Query: 133 VAGSPEGLSGHVDGRLREAKMNHPKGFTVDDRGNIYVADAMNMAIRKISDTG-VTTIAGG 191
+AG G +G DG R+A + P+ VD N+YVAD MN A+RKI+ +G TTIAGG
Sbjct: 90 LAGGGGGPAGFADGEPRDAAFDRPRSLAVDHADNVYVADRMNGAVRKIAPSGFTTTIAGG 149
Query: 192 KSMRGGHLDGPSDDAKFSTDFEIRYISSSCSLLVIDRGNQAIREIALHNDDCEYQYEAGF 251
+S G DGP+ +A FS+DFE+ Y+ C+LLV DRGN+ IR+I L +DC + + G
Sbjct: 150 RSKGPGRKDGPAQNATFSSDFELVYVPKMCALLVTDRGNRLIRQINLKQEDCARETQPGL 209
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,219,296
Number of extensions: 733008
Number of successful extensions: 3179
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3170
Number of HSP's successfully gapped: 4
Length of query: 517
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 412
Effective length of database: 11,553,331
Effective search space: 4759972372
Effective search space used: 4759972372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)