BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0256800 Os06g0256800|J100034P19
         (227 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0256800  Conserved hypothetical protein                      178   4e-45
Os02g0733400  Conserved hypothetical protein                       67   1e-11

>Os06g0256800 Conserved hypothetical protein
          Length = 227

 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/227 (50%), Positives = 114/227 (50%)

Query: 1   MDLDADMIXXXXXXXXXXXXXXXXXXXXTGSFFPDRSTTLGTLMGVSAFGGGGQXXXXXX 60
           MDLDADMI                    TGSFFPDRSTTLGTLMGVSAFGGGGQ      
Sbjct: 1   MDLDADMIPSSPSADYSSPSSSDLDTESTGSFFPDRSTTLGTLMGVSAFGGGGQRRAART 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRDDAGGPPT 120
                                                             CRDDAGGPPT
Sbjct: 61  PARTERERAPLAARPAGEEEEGRRAGGWRRRRRRRQRRGSRSLGGSWWRLCRDDAGGPPT 120

Query: 121 SLGEFLDMERQLAGADFLCDGVGGGGSEREXXXXXXXXXXXXXXXLFEDGRVRXXXXXXX 180
           SLGEFLDMERQLAGADFLCDGVGGGGSERE               LFEDGRVR       
Sbjct: 121 SLGEFLDMERQLAGADFLCDGVGGGGSEREAAAAAAAAAAVSATALFEDGRVRPPQPQQP 180

Query: 181 AAEERGRWRLQRATEXXXXXXXXXXXXXXXLARLPVLLTGICSGGAG 227
           AAEERGRWRLQRATE               LARLPVLLTGICSGGAG
Sbjct: 181 AAEERGRWRLQRATEGSSSSSSAGAAASSSLARLPVLLTGICSGGAG 227



>Os02g0733400 Conserved hypothetical protein
          Length = 190

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 58/116 (50%), Gaps = 31/116 (26%)

Query: 111 CRDDAGGPPTSLGEFLDMERQLAGADFLCDGVGGGGSEREXXXXXXXXXXXXXXXLFEDG 170
           CRDDAGG  TSLG FL MERQLAG   L    G G  ER+               LF++G
Sbjct: 106 CRDDAGGT-TSLGHFLHMERQLAGTGLLS---GDGVEERK-----------SSTPLFDNG 150

Query: 171 RVRXXXXXXXAAEERGRWRLQRATEXXXXXXXXXXXXXXXLARLPVLLTGICSGGA 226
           R         A EER +W+L+R+ +               L RLPVLLT ICSGGA
Sbjct: 151 RA------LPAREERAKWQLRRSAQ----------ATSSSLVRLPVLLTAICSGGA 190



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,104,422
Number of extensions: 136406
Number of successful extensions: 283
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)