Os02g0733400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0733400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 401.54 | 0.941 | 6.8 | 1.87 | 2.64 | 2.91 | 0.29 | -2.73 | 1.23 | 22.5 | 12.36 | 84 | 16.8 | -- |
| 409.59 | 0.943 | 6.79 | 1.9 | 2.44 | 2.99 | -0.126 | -- | 1.24 | 22.9 | 14.07 | 75 | 16.1 | -- |
| 401.24 | 0.933 | 6.81 | 1.9 | 2.62 | 2.96 | -- | -2.37 | 1.22 | 22.6 | 13.46 | 81 | 16.6 | -- |
| 409.64 | 0.943 | 6.79 | 1.89 | 2.44 | 2.96 | -- | -- | 1.23 | 22.9 | 13.97 | 75 | 16.1 | -- |
| 484.48 | 1.03 | 6.73 | 1.92 | -- | 3.39 | -- | -0.823 | 1.27 | -- | 20 | 46 | 10.8 | -- |
| 567.98 | 1.12 | 6.85 | 1.81 | 3.24 | -- | -0.0234 | -- | 1.12 | 21.8 | -- | -- | -- | -- |
| 567.98 | 1.12 | 6.85 | 1.81 | 3.24 | -- | -- | -- | 1.12 | 21.8 | -- | -- | -- | -- |
| 485.51 | 1.03 | 6.73 | 1.91 | -- | 3.36 | -- | -- | 1.26 | -- | 20 | 46 | 10.7 | -- |
| 498.26 | 1.04 | 6.83 | -- | 2.34 | 2.91 | -- | -- | 1.04 | 22.7 | 10 | 66 | 16.4 | -- |
| 1193.52 | 1.61 | 6.76 | 1.84 | -- | -- | -- | -- | 1.12 | -- | -- | -- | -- | -- |
| 654.4 | 1.2 | 6.89 | -- | 3.25 | -- | -- | -- | 0.921 | 21.8 | -- | -- | -- | -- |
| 582.65 | 1.12 | 6.77 | -- | -- | 3.36 | -- | -- | 1.07 | -- | 20 | 53 | 10.6 | -- |
| 1283.05 | 1.67 | 6.81 | -- | -- | -- | -- | -- | 0.915 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 406.52 | radiation | 10 | 90 | < th | dose dependent | sin | 23 | NA |
| 3 | 409.37 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 24 | 422.32 | radiation | 20 | 90 | < th | dose dependent | rect. | 9 | 11 |
| 25 | 422.34 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 14 |
| 26 | 422.89 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 46 | 428.08 | radiation | 10 | 90 | < th | dose independent | sin | 22 | NA |
| 50 | 429.24 | radiation | 10 | 90 | > th | dose independent | sin | 22 | NA |
| 70 | 433.28 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 11 |
| 74 | 433.58 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 9 |
| 96 | 436.69 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 98 | 436.83 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 105 | 437.55 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 8 |
| 177 | 443.24 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |
| 183 | 444.03 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 197 | 445.46 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 9 |
| 214 | 446.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 232 | 447.37 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 244 | 448.19 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 21 |
| 263 | 448.58 | radiation | 20 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 279 | 449.35 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 282 | 449.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 372 | 452.31 | radiation | 20 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 404 | 453.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 476 | 455.61 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 5 |
| 509 | 456.41 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 595 | 456.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 612 | 457.24 | radiation | 20 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 646 | 458.43 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 674 | 459.32 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 800 | 461.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 823 | 462.50 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 23 |
| 828 | 462.53 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 843 | 462.85 | radiation | 1 | 90 | > th | dose dependent | sin | 20 | NA |
| 852 | 463.09 | humidity | 80 | 90 | < th | dose independent | rect. | 9 | 8 |
| 892 | 463.87 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 23 |
| 939 | 464.60 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 16 |
| 982 | 465.36 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 21 |