BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0733400 Os02g0733400|Os02g0733400
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0733400  Conserved hypothetical protein                      212   1e-55
Os06g0256800  Conserved hypothetical protein                       72   2e-13

>Os02g0733400 Conserved hypothetical protein
          Length = 190

 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/190 (63%), Positives = 121/190 (63%)

Query: 1   MDGDAGMIXXXXXXXXXXXXXDVDTESTGSSFFRDRSTTLGTLMGVSFXXXXXXXXXXXX 60
           MDGDAGMI             DVDTESTGSSFFRDRSTTLGTLMGVSF            
Sbjct: 1   MDGDAGMIPTSSSAETSPSSSDVDTESTGSSFFRDRSTTLGTLMGVSFDDDEEQQQQQGE 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCRDDAGGTTSLGHFL 120
                                                       LCRDDAGGTTSLGHFL
Sbjct: 61  AARDGGEESERPRAAAAEEEEDGRRWRRRWRRRRWRGAGGSWWRLCRDDAGGTTSLGHFL 120

Query: 121 HMERQLAGTGLLSGDGVEERKSSTPLFDNGRALPAREERAKWQLRRSAQATSSSLVRLPV 180
           HMERQLAGTGLLSGDGVEERKSSTPLFDNGRALPAREERAKWQLRRSAQATSSSLVRLPV
Sbjct: 121 HMERQLAGTGLLSGDGVEERKSSTPLFDNGRALPAREERAKWQLRRSAQATSSSLVRLPV 180

Query: 181 LLTAICSGGA 190
           LLTAICSGGA
Sbjct: 181 LLTAICSGGA 190



>Os06g0256800 Conserved hypothetical protein
          Length = 227

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 66/117 (56%), Gaps = 31/117 (26%)

Query: 105 LCRDDAGGT-TSLGHFLHMERQLAGTGLLS---GDGVEERKSSTP-----------LFDN 149
           LCRDDAGG  TSLG FL MERQLAG   L    G G  ER+++             LF++
Sbjct: 110 LCRDDAGGPPTSLGEFLDMERQLAGADFLCDGVGGGGSEREAAAAAAAAAAVSATALFED 169

Query: 150 GRA------LPAREERAKWQLRRSAQATSSS----------LVRLPVLLTAICSGGA 190
           GR        PA EER +W+L+R+ + +SSS          L RLPVLLT ICSGGA
Sbjct: 170 GRVRPPQPQQPAAEERGRWRLQRATEGSSSSSSAGAAASSSLARLPVLLTGICSGGA 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,582,724
Number of extensions: 156275
Number of successful extensions: 314
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 3
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)