BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0239600 Os06g0239600|AK062674
         (104 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0239600  Protein of unknown function DUF246, plant fami...   187   1e-48
Os06g0545900  Protein of unknown function DUF246, plant fami...    84   3e-17

>Os06g0239600 Protein of unknown function DUF246, plant family protein
          Length = 104

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 18  MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKLIQQT 77
           MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKLIQQT
Sbjct: 18  MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKLIQQT 77

Query: 78  KQVHERPVARSIFRHPRCLDCMCRTEN 104
           KQVHERPVARSIFRHPRCLDCMCRTEN
Sbjct: 78  KQVHERPVARSIFRHPRCLDCMCRTEN 104



>Os06g0545900 Protein of unknown function DUF246, plant family protein
          Length = 603

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 57/85 (67%)

Query: 18  MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKLIQQT 77
           +TD GSQ SSLV GYR+Y+G G  PT+ PN++R A IL +   + W  FE RVR ++++ 
Sbjct: 511 VTDSGSQLSSLVSGYRVYHGRGRAPTLHPNRKRYAQILGEEEGIGWGGFERRVRNMVEEY 570

Query: 78  KQVHERPVARSIFRHPRCLDCMCRT 102
           K+V  RP  RS++R PR   CMCR 
Sbjct: 571 KRVSARPRGRSVYRQPRTPGCMCRA 595



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,154,049
Number of extensions: 100145
Number of successful extensions: 315
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)